Author

T. E. A. Peto

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 7

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:metagenomics· 6 Research Focus:differential expression· 4 Organism:human· 4 Approach:experimental assay· 3 Approach:statistical model· 3 Research Focus:variant calling· 2 Organism:bacteria (other)· 1 Research Focus:batch correction / integration· 1

Frequent Co-Authors

D. W. Crook· 6 shared A. S. Walker· 5 shared D. Foster· 4 shared N. D. Sanderson· 4 shared J. Swann· 3 shared A. J. Brent· 2 shared A. T. M. Hubbard· 2 shared A. Taylor· 2 shared

Activity by Year

2017-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 32 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

6 shared papersMicrobiology

D. W. Crook

Mutual co-authors in cluster

Author profile →

7 papers

Recent·Most cited

Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae

L. P. Shaw, K. K. Chau, J. Kavanagh, M. AbuOun, E. Stubberfield, H. S. Gweon, L. Barker, G. Rodger, M. J. Bowes, A. T. M. Hubbard, H. Pickford, J. Swann, D. Gilson, R. P. Smith, S. J. Hoosdally, , REHAB consortium

The paper analyzes the pangenome dynamics of Enterobacteriaceae from environmental sources, finding that plasmids carry more AMR genes and are influenced by niche and geography rather than phylogeny.

Science Advances · Apr 9, 2021Peer-reviewedMicrobiology

Metagenomic Nanopore sequencing of influenza virus direct from clinical respiratory samples

K. Lewandowski, Y. Xu, S. T. Pullan, D. Foster, N. D. Sanderson, A. Vaughan, M. Morgan, N. Bright, J. Kavanagh, R. T. Vipond, M. W. Carroll, A. C. Marriott, K. E. Gooch, M. Andersson, K. Jeffery, , P. C. Matthews

This study uses metagenomic Nanopore sequencing to detect influenza virus in clinical respiratory samples, achieving high sensitivity and complete genome sequencing.

bioRxiv · Jun 19, 2019Microbiology

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

H. S. Gweon, L. P. Shaw, J. Swann, N. De Maio, M. AbuOun, A. T. M. Hubbard, M. J. Bowes, M. J. Bailey, T. E. A. Peto, S. J. Hoosdally, A. S. Walker, R. P. Sebra, D. W. Crook, M. Anjum, D. S. Read, , The REHAB consortium

This study evaluates how sequencing depth affects taxonomic composition and AMR gene detection in metagenomic samples, finding that higher depth is needed for AMR gene richness.

bioRxiv · Mar 31, 2019Microbiology

Nanopore metagenomic sequencing of full length human metapneumovirus (HMPV) within a unique sub-lineage

Y. Xu, K. Lewandowski, S. Lumley, N. D. Sanderson, A. Vaughan, R. T. Vipond, M. W. Carroll, K. Jeffery, D. Foster, A. S. Walker, T. E. A. Peto, D. W. Crook, S. T. Pullan, P. C. Matthews

This study uses Nanopore metagenomic sequencing to directly sequence the full-length HMPV genome from a UK patient, identifying a unique genetic group and demonstrating the utility of Nanopore for clinical diagnosis.

bioRxiv · Dec 17, 2018 · PreprintMicrobiology

Identifying mixed Mycobacterium tuberculosis infection and laboratory cross-contamination during Mycobacterial sequencing programs

D. H. Wyllie, E. Robinson, T. E. A. Peto, D. W. Crook, A. Ajileye, P. Rathod, R. Allen, L. Jarrett, E. G. Smith, A. S. Walker

The paper develops metrics to detect mixed Mycobacterium tuberculosis infections and cross-contamination in sequencing data from tuberculosis diagnostic labs.

bioRxiv · Jun 12, 2018Microbiology

Real-time analysis of nanopore-based metagenomic sequencing from orthopaedic device infection

N. D. Sanderson, T. L. Street, D. Foster, J. Swann, B. L. Atkins, A. J. Brent, M. A. McNally, S. Oakley, A. Taylor, T. E. A. Peto, D. Crook, D. W. Eyre

This paper compares metagenomic sequencing using Illumina MiSeq and Oxford Nanopore MinION platforms for diagnosing prosthetic joint infections, demonstrating a real-time analysis pipeline for rapid bacterial detection.

bioRxiv · Nov 17, 2017Microbiology

Molecular diagnosis of orthopaedic device infection direct from sonication fluid by metagenomic sequencing

T. L. Street, N. D. Sanderson, B. L. Atkins, A. J. Brent, K. Cole, D. Foster, M. A. McNally, S. Oakley, L. Peto, A. Taylor, T. E. A. Peto, D. W. Crook, D. W. Eyre

This study shows metagenomic sequencing of sonication fluid can accurately diagnose prosthetic joint infections with high sensitivity and specificity.

bioRxiv · Mar 18, 2017Microbiology