Author

V. Ng

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5 Ecology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Research Focus:gene regulatory network inference· 4 Research Focus:cell type annotation· 3 Research Focus:differential expression· 3 Assay:whole-genome sequencing· 3 Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Research Focus:variant calling· 2

Frequent Co-Authors

A. Lipzen· 2 shared C. Daum· 2 shared G. He· 2 shared I. V. Grigoriev· 2 shared K. LaButti· 2 shared M. Yan· 2 shared S. Haridas· 2 shared V. Singan· 2 shared

Activity by Year

2020-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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2 shared papersMicrobiology

A. Lipzen

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Multi-omics analysis of a traditional fermented food reveals a byproduct-associated subpopulation of Neurospora intermedia for waste-to-food upcycling

V. Maini Rekdal, J. M. Villalobos-Escobedo, N. Rodriguez-Valeron, M. Olaizola Garcia, D. Prado Vasquez, A. Rosales, P. M. Sorensen, E. E. K. Baidoo, A. Calheiros de Carvalho, R. Riley, A. Lipzen, G. He, M. Yan, S. Haridas, C. Daum, , J. D. Keasling

This study uses multi-omics analysis to characterize Neurospora intermedia in oncom, revealing its role in byproduct conversion and potential for waste-to-food upcycling.

bioRxiv · Jul 24, 2024 · PreprintMicrobiology

High phenotypic and genotypic plasticity among strains of the mushroom-forming fungus Schizophyllum commune

I. M. Marian, I. D. Valdes, R. D. Hayes, K. LaButti, K. Duffy, M. Chovatia, J. Johnson, V. Ng, L. G. Lugones, H. A. B. Wosten, I. V. Grigoriev, R. A. Ohm

This study examines phenotypic and genotypic variation in Schizophyllum commune strains, finding high diversity in mushroom development and lignocellulose degradation, with conserved genes for these traits across genomes.

bioRxiv · Feb 21, 2024 · PreprintMicrobiology

Time-resolved transcriptomics reveal a mechanism of host niche defense: beneficial root endophytes deploy a host-protective antimicrobial GH18-CBM5 chitinase

R. Eichfeld, L. K. Mahdi, C. De Quattro, L. Armbruster, A. B. Endeshaw, S. Miyauchi, M. J. Hellmann, S. Cord-Landwehr, I. Grigoriev, D. Peterson, V. Singan, K. Lail, E. Savage, V. Ng, G. Langen, , A. Zuccaro

This study uses time-resolved transcriptomics to identify a GH18-CBM5 chitinase in Sebacinales fungi that protects plants against the pathogen Bipolaris sorokiniana.

bioRxiv · Dec 29, 2023 · PreprintMicrobiology

The soybean rust pathogen Phakopsora pachyrhizi displays transposable element proliferation that correlates with broad host-range adaptation on legumes

Y. K. Gupta, F. C. Marcelino-Guimaraes, C. Lorrain, A. D. Farmer, S. Haridas, E. G. C. Ferreira, V. S. Lopes-Caitar, L. S. Oliveira, E. Morin, S. Widdison, C. Cameron, Y. Innoue, K. Thor, K. Robinson, E. Drula, , G

This study sequenced three Phakopsora pachyrhizi genomes, revealing high transposable element content and its correlation with host-range adaptation in legumes.

bioRxiv · Jun 13, 2022 · PreprintMicrobiology

Application of Cas12j for Streptomyces editing and cluster activation

L. L. Tan, E. Heng, N. Zulkarnain, C. Y. Leong, V. Ng, L. K. Yang, D. C. S. Seow, G. Peh, Y. H. Lim, K. Lokanand, Y. Kanagasundaram, S. B. Ng, F. T. Wong

This study introduces Cas12j for Streptomyces editing, showing improved efficiency over Cas12a and FnCpf1.

bioRxiv · Oct 28, 2021 · PreprintMicrobiology

Identification of enzymes for lignocellulose degradation in the genome and transcriptome of the aquatic hyphomycete Clavariopsis aquatica.

F. Heeger, E. C. Bourne, C. Wurzbacher, E. Funke, A. Lipzen, G. He, V. Ng, I. V. Grigoriev, D. Schlosser, M. T. Monaghan

The paper identifies enzymes for lignocellulose degradation in Clavariopsis aquatica by analyzing its genome and transcriptome under different substrates.

bioRxiv · Jun 18, 2020 · PreprintEcology