Author

Shiori Maeda

RIKEN

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 3

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Organism:human· 2 Assay:ATAC-seq· 1 Research Focus:cell type annotation· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1

Frequent Co-Authors

Aki MinodaiD· 2 shared Jen-Chien ChangiD· 2 shared Takahiro SuzukiiD· 2 shared Yurina Miyajima· 2 shared Aditi KanhereiD· 1 shared Aiko Shojima· 1 shared Akira HasegawaiD· 1 shared Albin SandeliniD· 1 shared

Activity by Year

2020-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersGenomics

Aki MinodaORCID

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3 papers

Recent·Most cited

Epigenomic and transcriptomic germ-free ageing atlas reveals sterile inflammation as an intrinsic ageing feature

Ward Nijen Twilhaar, Jen-Chien Chang, Tommy W. Terooatea, Haruka Yabukami, Sachi Kato, Nicola A. Hetherington, Naoko Satoh‐Takayama, Alireza Ahmadi, Tsung-Han Hsieh, Prashanti Jeyamohan, Tomoko Kageyama, Yan Jun Lan, Nanako Kadono-Maekubo, Shiori Maeda, Yurina Miyajima, , Aki Minoda

This study presents a single-cell epigenomic and transcriptomic atlas of aged mice under germ-free conditions, revealing sterile inflammation as an intrinsic ageing feature.

bioRxiv · Nov 19, 2025 · PreprintGenomics

Master Transcription Factors Regulate the DNA Methylation Landscape During Hepatocyte Differentiation

Takahiro Suzuki, Erina Furuhata, Shiori Maeda, Mami Kishima, Yurina Miyajima, Yuki Tanaka, Joanne Lim, Hajime Nishimura, Yuri Nakanish, Aiko Shojima, Harukazu Suzuki

The paper identifies transcription factors that regulate DNA methylation dynamics during hepatocyte differentiation, revealing GATA6's role in DNA demethylation and chromatin activation.

bioRxiv · Dec 16, 2020 · PreprintGenomics

Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping

Jordan A. Ramilowski, Chi Wai Yip, Saumya Agrawal, Jen-Chien Chang, Yari Ciani, Ivan V. Kulakovskiy, Mickaël Mendez, Jasmine Li Ching Ooi, John F. Ouyang, Nick Parkinson, Andreas Petri, Leonie Roos, Jessica Severin, Kayoko Yasuzawa, Imad Abugessaisa, , Chinatsu Yamamoto

The paper functionally annotates human long non-coding RNAs by systematically knocking down 285 lncRNAs and analyzing molecular phenotypes using CAGE sequencing.

Genome Research · Jul 1, 2020Peer-reviewedGenomics