Author

Siddharth Annaldasula

Carnegie Mellon University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Neuroscience· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Abigail LindiD· 1 shared Allyson G. HindleiD· 1 shared Alyssa J. LawleriD· 1 shared Amanda M. KowalczykiD· 1 shared Ana M. BreitiD· 1 shared Andreas R. PfenningiD· 1 shared Andrew J. Harris· 1 shared Andrew Z. WangiD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperNeuroscience

Abigail LindORCID

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3 papers

Recent·Most cited

commonPeak: Equivalence testing to identify common ChIP-seq peaks across conditions and protocols

August H Swillus, Francesca Tiso, Siddharth Annaldasula, Eldar T. Abdullaev, Regine G. M. Armann, Peter F. Arndt, Kirsten Kübler

commonPeak identifies common ChIP-seq peaks across conditions and protocols using equivalence testing, finding 225 shared estrogen receptor peaks with similar enrichment in breast cancer cells.

bioRxiv · Feb 17, 2026 · PreprintGenomics

Vocal learning-associated convergent evolution in mammalian proteins and regulatory elements

Morgan E. Wirthlin, Tobias A. Schmid, Julie Estelle Elie, Xiaomeng Zhang, Amanda M. Kowalczyk, Ruby W. Redlich, Varvara A. Shvareva, Ashley Rakuljic, Maria B. Ji, Ninad S. Bhat, Irene M. Kaplow, Daniel E. Schäffer, Alyssa J. Lawler, Andrew Z. Wang, BaDoi N. Phan, , Irina Ruf

The paper identifies proteins and regulatory elements associated with vocal learning by analyzing bat neural activity and epigenomic data.

Science · Feb 29, 2024Peer-reviewedNeuroscience

Network Analysis and Human Single Cell Brain Transcriptomics Reveal Novel Aspects of Alpha-Synuclein (SNCA) Biology

Erin A. Teeple, Khushboo Jindal, Beril Kiragasi, Siddharth Annaldasula, Ann Byrne, Lilly Chai, Mahdiar Sadeghi, Can Kayatekin, Srinivas Shankara, Katherine Wood Klinger, S. Pablo Sardi, Stephen L. Madden, Dinesh Kumar

The paper identifies a conserved SNCA co-expression module in human brain single-nucleus RNA-seq data and links it to Parkinson's Disease risk loci through protein-protein interaction networks and CRISPR validation.

bioRxiv · Jun 5, 2020 · PreprintNeuroscience