Author

Sushmita Sen

University of California, San Francisco

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Cell Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:cell type annotation· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Juan C. IrwiniD· 3 shared Júlia Vallvé-JuanicoiD· 3 shared Kim Chi VoiD· 3 shared Sahar HoushdaraniD· 3 shared Idit KostiiD· 2 shared Linda C. GiudiceiD· 2 shared Marina SirotaiD· 2 shared Wanxin WangiD· 2 shared

Activity by Year

2022-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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3 shared papersSystems Biology

Juan C. IrwinORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Global Endometrial DNA Multi-omics Analysis Reveals Insights into mQTL Regulation and Associated Endometriosis Disease Risk

Sally Mortlock, Sahar Houshdaran, Idit Kosti, Nilüfer Rahmioğlu, CAMRAN R. NEZHAT, Allison F. Vitonis, Shan V. Andrews, Parker Grosjean, Manish D. Paranjpe, Andrew W. Horne, Alison F. Jacoby, Jeannette C. Lager, Jessica Opoku‐Anane, Kim Chi Vo, Evelina Manvelyan, , Linda C. Giudice

The paper analyzes endometrial DNA methylation and genetic variants to identify mQTLs and their association with endometriosis risk and menstrual cycle phases.

bioRxiv · Nov 27, 2022 · PreprintSystems Biology

The Tabula Sapiens: a multiple organ single cell transcriptomic atlas of humans

Robert C. Jones, Jim Karkanias, Mark A. Krasnow, Angela Oliveira Pisco, Stephen R. Quake, Julia Salzman, Nir Yosef, Bryan Bulthaup, Phillip Brown, William Harper, Marisa Hemenez, Ravikumar Ponnusamy, Ahmad Salehi, Bhavani A. Sanagavarapu, Eileen Spallino, , Andrea R. Yung

Nearly 500,000 cells from 24 human tissues, many from one donor, characterize over 400 cell types and enable within-donor study of T-cell clones, B-cell mutation rates and splicing.

Science · May 12, 2022Peer-reviewedCell Biology

Whole-tissue deconvolution and scRNAseq analysis identify altered endometrial cellular compositions and functionality associated with endometriosis

Daniel G. Bunis, Wanxin Wang, Júlia Vallvé-Juanico, Sahar Houshdaran, Sushmita Sen, Isam Ben Soltane, Idit Kosti, Kim Chi Vo, Juan C. Irwin, Linda C. Giudice, Marina Sirota

Frontiers in Immunology · Jan 5, 2022Peer-reviewedBioinformatics