W. Suda

Comprehensive non-black box classification of highly correlated ecological time series pairs containing many zeros: the case of gut microbiome of mice

This paper introduces a non-black-box method to classify ecological time series pairs in mouse gut microbiota, revealing significant correlations despite many zeros and non-stationarity.

Connection between drug-mediated neurotransmission and salivary microbiome

This study investigates how CNS drugs affect the salivary microbiome and links these changes to cognitive function and neurodegeneration.

Dimension reduction of microbiome data linked Bifidobacterium to allergic rhinitis

The paper applies dimension reduction methods to microbiome data and links Bifidobacterium to allergic rhinitis risk and nutrient intake.

Dietary fiber induces a fat preference associated with the gut microbiota

This study shows that dietary fiber consumption in mice leads to a preference for high-fat diets, linked to specific gut microbiota compositions.

High-resolution fecal pharmacokinetic modeling in mice with orally administered antibiotics

This study develops a high-resolution fecal pharmacokinetic model in mice to analyze antibiotic concentrations and inter-individual variability.

Uncovering plant microbiomes using long-read metagenomic sequencing

The paper uses long-read metagenomic sequencing to analyze the rice leaf microbiome, identifying novel bacterial species and genetic elements.

High-resolution temporal profiling of the gut microbiome through the whole life of mice

This study tracks the gut microbiome of mice over their entire lifespan, revealing patterns of microbial persistence and age-related changes linked to longevity.

Multiple nutritional and gut microbial factors associated with allergic rhinitis: the Hitachi Health Study

The study identifies four nutrients and two gut microbiome genera associated with reduced risk of allergic rhinitis, with an interaction between retinol and Prevotella.

Species-specific assembly of root-associated bacterial microbiota mediated by a combination of plant specialized metabolites

The paper shows that tobacco-specific PSMs mediate the enrichment of Arthrobacter in the tobacco endosphere through bacterial catabolism.

Mucin O-glycans facilitate symbiosynthesis to maintain gut immune homeostasis

This study identifies mucin O-glycans as a fermentation substrate for n-butyrate production, which supports immune homeostasis in the gut.