Y. Fu

NERDSS simulates multibody self-assembly processes by integrating reaction-diffusion with rule-based models, enabling comparison with experimental data on clathrin-mediated endocytosis and viral lattice assembly.

The paper examines 3D chromatin changes in T-ALL, identifies TAD fusion events linked to oncogene activation, and shows drug treatments can restore some interactions.

This paper introduces an implicit lipid model for efficient reaction-diffusion simulations of protein binding to surfaces of arbitrary topology, showing agreement with explicit lipid models and enabling stable multi-protein complex formation.

This study shows that m6A-binding YTHDF proteins facilitate stress granule formation by modulating phase separation through their m6A-binding domain and intrinsically disordered region.

The paper identifies differentially expressed proteins in tumor-associated vascular endothelial cells of colorectal cancer and links some to angiogenesis and metastasis.

This study presents the structure of FtsX's extracellular loop and shows its essential interaction with PcsB for cell viability in Streptococcus pneumoniae.