Author

Z. C. Holmes

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 2 Ecology· 1 Immunology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 4 Organism:human· 3 Research Focus:cell type annotation· 2 Research Focus:host-pathogen & immune response· 2 Assay:metagenomics· 2 Assay:bulk RNA-seq· 1 Research Focus:ecology & biodiversity· 1 Assay:proteomics· 1

Frequent Co-Authors

L. A. David· 4 shared E. P. Dallow· 3 shared H. K. Durand· 2 shared J. D. Silverman· 2 shared J. F. Rawls· 2 shared S. Jiang· 2 shared A. C. Mincey· 1 shared A. Han· 1 shared

Activity by Year

2020-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersMicrobiology

L. A. David

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Microbiota responses to different prebiotics are conserved within individuals and associated with habitual fiber intake

Z. C. Holmes, M. M. Villa, H. K. Durand, S. Jiang, E. P. Dallow, B. L. Petrone, J. D. Silverman, P.-H. Lin, L. A. David

The paper investigates how gut microbiota respond to different prebiotics within individuals and links these responses to habitual fiber intake.

bioRxiv · Jun 26, 2021Microbiology

Ecological memory of prior nutrient exposure in the human gut microbiome

J. Letourneau, Z. C. Holmes, E. P. Dallow, H. K. Durand, S. Jiang, S. K. Gupta, A. C. Mincey, M. J. Muehlbauer, J. R. Bain, L. A. David

The paper shows the human gut microbiome retains a memory of past carbohydrate exposures, enhancing future metabolic responses through rapid transcriptional changes.

bioRxiv · Jun 21, 2021Ecology

Short-chain fatty acid production by gut microbiota from children with obesity is linked to bacterial community composition and prebiotic choice

Z. C. Holmes, J. D. Silverman, H. K. Dressman, Z. Wei, E. P. Dallow, S. C. Armstrong, P. C. Seed, J. F. Rawls, L. A. David

This study examines SCFA production by gut microbiota from children with obesity in response to different prebiotics, finding significant inter-donor variation and donor-dependent effectiveness.

mBio · Aug 25, 2020Peer-reviewedMicrobiology

Conserved anti-inflammatory effects and sensing of butyrate in zebrafish

P. M. Cholan, A. Han, B. R. Woodie, A. R. Kurz, W. J. Britton, L. Ye, Z. C. Holmes, J. R. McCann, L. A. David, J. F. Rawls, S. H. Oehlers

The paper shows that butyrate, a short-chain fatty acid, has anti-inflammatory effects in zebrafish by reducing neutrophil and M1 macrophage recruitment to wounds, and identifies a conserved receptor for butyrate sensing in fish.

bioRxiv · May 13, 2020Immunology