Author

Arpita Sarkar

Centre National de la Recherche ScientifiqueORCID 0000-0001-5061-2505Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Assay:whole-genome sequencing· 2 Assay:DNA methylation· 1 Organism:human· 1 Organism:mouse· 1 Research Focus:perturbation response prediction· 1

Frequent Co-Authors

Gaël CristofariiD· 3 shared Cécilia Domrane· 2 shared Laure Ferry· 2 shared Pierre‐Antoine DefosseziD· 2 shared Sophie LancianoiD· 2 shared Anaelle AzoguiiD· 1 shared Aurélien J. DoucetiD· 1 shared Bertrand DucosiD· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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3 shared papersGenomics

Gaël CristofariORCID

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3 papers

Recent·Most cited

GenomicsCell GenomicsPeer-reviewedFeb 1, 2024

Comprehensive locus-specific L1 DNA methylation profiling reveals the epigenetic and transcriptional interplay between L1s and their integration sites.

Sophie Lanciano, Claude Philippe, Arpita Sarkar…·Gaël Cristofari

The paper profiles L1 DNA methylation at single-locus resolution across normal and cancer cells, revealing how methylation and transcription interact with L1 integration sites.

50 citationstop 2%

humanwhole-genome sequencing

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Molecular BiologyNature Structural & Molecular BiologyPeer-reviewedJul 24, 2023

A genome-wide knock-out screen for actors of epigenetic silencing reveals new regulators of germline genes and 2-cell like cell state

Nikhil Gupta, Lounis Yakhou, Julien Richard Albert…·Pierre‐Antoine Defossez

The paper identifies new regulators of germline genes and 2-cell like cell state through a genome-wide CRISPR knock-out screen in mouse ES cells.

22 citations

mouseexperimental assay

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GenomicsMethods in molecular biologyPeer-reviewedNov 30, 2022

Targeted nanopore resequencing and methylation analysis of LINE-1 retrotransposons

Arpita Sarkar, Sophie Lanciano, Gaël Cristofari

The paper describes a targeted nanopore sequencing method to sequence and analyze DNA methylation of LINE-1 retrotransposons with high coverage and haplotype resolution.

6 citations

DNA methylationwhole-genome sequencing

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