Author

Xiqi Li

Baylor College of MedicineORCID 0000-0003-0875-8337Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Aleksandar MilosavljeviciD· 2 shared Awdhesh KaliaiD· 2 shared Jessica Galloway-PeñaiD· 2 shared Samuel A. ShelburneiD· 2 shared Alexander DobiniD· 1 shared Alexandra Scavelli· 1 shared Ali MortazaviiD· 1 shared Ana BertheliD· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersGenomics

Aleksandar MilosavljevicORCID

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Author profile →

4 papers

Recent·Most cited

The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models

Joel S. Rozowsky, Jiahao Gao, Beatrice Borsari, Yucheng Yang, Timur R. Galeev, Gamze Gürsoy, Charles B. Epstein, Kun Xiong, Jinrui Xu, Tianxiao Li, Jason J. Liu, Keyang Yu, Ana Berthel, Zhanlin Chen, Fábio C. P. Navarro, , B Bernstein

The paper introduces the EN-TEx resource, which provides personal epigenomes and variant-impact models across multiple tissues, revealing allele-specific loci and their associations with GWAS loci.

Cell · Mar 1, 2023Peer-reviewedGenomics

Latent factor in Brain RNA-seq studies reflects cell type and clinical heterogeneity

Rami Al‐Ouran, Chaozhong Liu, Linhua Wang, Ying‐Wooi Wan, Xiqi Li, Aleksandar Milosavljevic, Joshua M Shulman, Zhandong Liu

The paper identifies a latent factor in brain RNA-seq data that reflects cell type and clinical heterogeneity, improving the identification of biological pathways and biomarkers.

bioRxiv · Nov 13, 2022 · PreprintGenomics

Concurrence of Porin Loss and Modular Amplification of β-Lactamase Encoding Genes Drives Carbapenem Resistance in a Cohort of Recurrent Enterobacterales Bacteremia

William C. Shropshire, Samuel L Aitken, Reed Pifer, Jiwoong Kim, Micah M. Bhatti, Xiqi Li, Awdhesh Kalia, Jessica Galloway-Peña, Pranoti V. Sahasrabhojane, César A. Arias, David E. Greenberg, Blake Hanson, Samuel A. Shelburne

This study identifies non-carbapenemase-producing CRE mechanisms in recurrent Enterobacterales infections driven by porin loss and β-lactamase gene amplification.

Journal of Antimicrobial Chemotherapy · Oct 8, 2020Peer-reviewedGenomics

Identification of a Chimeric M4 Protein and Novel Emm Pattern in Currently Circulating Strains of Emm4 Group A Streptococcus

Sruti DebRoy, Xiqi Li, Awdhesh Kalia, Jessica Galloway-Peña, Brittany J. Shah, Vance G. Fowler, Anthony R. Flores, Samuel A. Shelburne

The paper identifies a chimeric M4 protein and a novel Emm pattern in emm4 GAS strains due to an emm/enn gene fusion, which replaced pattern E strains in Houston over four years.

Microbial Genomics · Nov 1, 2018Peer-reviewedGenomics