TEDEdb: a large-scale resource and multi-cohort analysis of transposable element differential expression in cancer
Gennaro Calendo, Morgan Chaunzwa, Iman Dehzangi…·Jean‐Pierre J. Issa
The paper re-analyzes over 7,000 RNA-seq samples to study transposable element differential expression in cancer and finds TE expression is more prone to batch effects and can be induced by various compounds.