Author

Bhavya Singh

Icahn School of Medicine at Mount SinaiORCID 0000-0001-6641-6429Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cancer Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Assay:bulk RNA-seq· 1 Research Focus:cancer & tumor microenvironment· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Alessia BaccariniiD· 1 shared Alexander TepperiD· 1 shared Brian D. BrowniD· 1 shared Chiara FalcomatàiD· 1 shared Divya Chhamalwan· 1 shared Douglas F. NixoniD· 1 shared Elsa LawrenceiD· 1 shared Enrique Hernandez LemusiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperCancer Biology

Alessia BaccariniORCID

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2 papers

Recent·Most cited

A single-cell transposable element atlas of human cell identity

Helena Reyes-Gopar, Jez Lim Marston, Bhavya Singh, Matthew Greenig, Jonah Lin, Mario Ostrowski, Kipchoge N. Randall, Santiago Sandoval‐Motta, Nicholas Dopkins, Elsa Lawrence, Morgan M. O’Mara, Tongyi Fei, Rodrigo R. R. Duarte, Timothy R. Powell, Enrique Hernandez Lemus, , Matthew L. Bendall

This study develops a tool to analyze transposable element expression in single-cell RNA sequencing data and builds an atlas showing TEs delineate cell types in human PBMCs.

Cell Reports Methods · Jun 20, 2025Peer-reviewedGenomics

Plasminogen activator inhibitors orchestrate the immunosuppressive tumor microenvironment in pancreatic cancer

Chiara Falcomatà, Sebastian Rune Nielsen, Maximilian M. Schaefer, Bhavya Singh, Alexander Tepper, Divya Chhamalwan, Hunter T. Potak, Maxime Dhainaut, Gürkan Mollaoglu, Matthew D. Park, Miriam Mérad, Alessia Baccarini, Brian D. Brown

This study identifies Serpinb2 and Serpine1 as key factors in pancreatic cancer that remodel the tumor microenvironment to promote immune evasion and tumor progression.

bioRxiv · Jun 11, 2025 · PreprintCancer Biology