Author

Olivia G. Waltner

Fred Hutch Cancer CenterORCID 0000-0001-7021-0431Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:scRNA-seq· 3 Research Focus:cell type annotation· 2 Research Focus:gene regulatory network inference· 2 Organism:mouse· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Cole TrapnelliD· 3 shared Adam M. HeckiD· 2 shared Barbara Varnum‐FinneyiD· 2 shared Brandon HadlandiD· 2 shared Cynthia Nourigat-Mckay· 2 shared Dana L. JacksoniD· 2 shared Irwin D. BernsteiniD· 2 shared Sanjay R SrivatsaniD· 2 shared

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2021-2025 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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3 shared papersDevelopmental Biology

Cole TrapnellORCID

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4 papers

Recent·Most cited

GenomicsbioRxivPreprintJun 18, 2025

Multimodal single-cell analyses reveal distinct fusion-regulated transcriptional programs in Ewing sarcoma.

Olivia G. Waltner, April Ann Apfelbaum, Emma D. Wrenn…·Scott N. Furlan

The paper identifies distinct transcriptional programs in Ewing sarcoma driven by EWS::FLI1 fusions and shows their variability across tumors and cell lines.

DOI 10.1101/2025.06.18.660457

humanscRNA-seq

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GenomicsbioRxivPreprintAug 6, 2024

Optics-free reconstruction of shapes, images and volumes with DNA barcode proximity graphs

Hanna Liao, Sanjay V. Kottapalli, Yuqi Huang…·Sanjay R Srivatsan

The paper introduces SCOPE, an optics-free method to reconstruct 2D and 3D shapes using DNA barcode proximity graphs from sequencing data.

5 citations

DNA methylationexperimental assay

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Developmental BiologybioRxivPreprintJun 1, 2023

Differentiation latency, cell division symmetry, and dormancy signatures define fetal liver HSCs at single cell resolution

Takashi Ishida, Juliane I Mercoli, Adam M. Heck…·Brandon Hadland

The paper identifies rare fetal liver HSCs with unique features like differentiation latency and dormancy signatures using single cell RNA-sequencing and a niche-mimicking culture platform.

DOI 10.1101/2023.06.01.543314

mousescRNA-seq

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Developmental BiologyCell ReportsPeer-reviewedSep 1, 2021

Multipotent progenitors and hematopoietic stem cells arise independently during the endothelial to hematopoietic transition in the early mouse embryo

Tessa Dignum, Barbara Varnum‐Finney, Sanjay R Srivatsan…·Brandon Hadland

The paper shows that multipotent progenitors and HSC arise from distinct HE populations during mouse embryogenesis, identified through clonal assays and single-cell transcriptomics.

112 citationstop 1%

mousescRNA-seq

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