Camille Berthelot

This study analyzes NK cell receptor gene families in 41 mammals to test if menstruation evolution correlates with receptor repertoire changes, finding intensified purifying selection but no overall diversity shifts.

sPYce integrates single-nucleus ATAC-seq data across species using k-mer histograms, revealing conserved and divergent regulatory programs without requiring genome alignments.

This study identifies shared genetic variants and pathways across ten uterine disorders, revealing evolutionary influences on disease risk.

The paper studies gene regulatory evolution in salmonids after autotetraploidization, finding that it is influenced by developmental and tissue-specific factors, with constraints at advanced embryogenesis.

The paper identifies accelerated gene expression and regulatory evolution in mole-rats by integrating transcriptomics and cis-regulatory analysis across species.

The paper compares gene expression in endometrial epithelial cells across humans, mice, and non-human primates to show convergent evolution of uterine receptivity genes like LIF.

The paper uses phylogenetic modeling to analyze epigenomic changes in mole-rats and identifies regulatory elements associated with metabolic and hypoxia-related traits.

The paper constructs a high-resolution comparative atlas of paleopolyploid regions across 74 teleost genomes to study rediploidization and finds that some duplicated regions remained tetraploid for over 60 million years.

This paper introduces FINSURF, a machine learning tool that improves the prediction of pathogenic non-coding variants, achieving high accuracy in identifying disease-causing variants in clinical settings.

SCORPiOs improves gene phylogenies in teleost fish by integrating syntenic information, resolving inconsistencies in 70% of gene families and enhancing congruence with species trees and expression patterns.

The paper reconstructs the chromosome evolution of the ancestral vertebrate genome through two whole genome duplications and subsequent fusions, resolving ambiguities in the lamprey genetic map and providing insights into micro-chromosome origins.

The paper examines how regulatory landscapes influence gene expression stability across mammals, finding that conserved elements and element number are key to expression resilience.