Author

Annelie Johansson

ORCID 0000-0001-9029-1996Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cancer Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1

Frequent Co-Authors

Fabio PudduiD· 2 shared Tom CharlesworthiD· 2 shared Alan J. SimmonsiD· 1 shared Aurélie Modat· 1 shared Casper K. LumbyiD· 1 shared Emily C. HodgesiD· 1 shared Ermira Lleshi· 1 shared Jacqueline A. Yap· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersCancer Biology

Fabio PudduORCID

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2 papers

Recent·Most cited

Cancer BiologyCommunications MedicinePeer-reviewedJan 20, 2026

5-methylcytosine and 5-hydroxymethylcytosine are synergistic biomarkers for early detection of colorectal cancer

Fabio Puddu, Annelie Johansson, Aurélie Modat…·Robert J. Osborne

This study shows that combining 5mC and 5hmC measurements improves early CRC detection accuracy compared to conflated markers.

10 citationstop 1%

humanwhole-genome sequencing

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GenomicsCell ReportsPeer-reviewedMay 1, 2025

Temporally discordant chromatin accessibility and DNA demethylation define short and long-term enhancer regulation during cell fate specification

Lindsey N. Guerin, Timothy J. Scott, Jacqueline A. Yap…·Emily C. Hodges

The paper shows that chromatin accessibility and DNA demethylation occur at different times during enhancer regulation, with methylation states predicting chromatin dynamics using machine learning.

19 citationstop 3%

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