Author

Rui Xie

University of Central FloridaORCID 0000-0001-9769-8131Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Assay:DNA methylation· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Chi Pui PangiD· 1 shared Jeff S. MummiD· 1 shared Liyun ZhangiD· 1 shared Logan C. GanzeniD· 1 shared Mee Jung KoiD· 1 shared Mengrui ZhangiD· 1 shared Mingzhi Zhang· 1 shared Motokazu TsujikawaiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperNeuroscience

Chi Pui PangORCID

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2 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedJan 23, 2026

X-intNMF: A Cross- and Intra-Omics Regularized NMF Framework for Multi-Omics Integration

Tien-Thanh Bui, Rui Xie, Wei Zhang

X-intNMF improves multi-omics integration by modeling both cross-omics and intra-omics interactions, outperforming existing methods in cancer phenotype prediction and survival analysis.

2 citations

humanbulk RNA-seq

𝕏 PostBluesky

NeuroscienceScientific ReportsPeer-reviewedJun 1, 2021

Drug Screening with Zebrafish Visual Behavior Identifies Carvedilol as a Potential Treatment for Retinitis Pigmentosa

Logan C. Ganzen, Mee Jung Ko, Mengrui Zhang…·Yuk Fai Leung

This study screens drugs using zebrafish visual behavior to identify carvedilol as a potential treatment for retinitis pigmentosa.

29 citations

zebrafishexperimental assay

𝕏 PostBluesky