Author

Satyabrata Das

University of MinnesotaORCID 0000-0001-9790-6164Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:mouse· 2 Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Assay:scRNA-seq· 1 Research Focus:trajectory inference· 1

Frequent Co-Authors

Daniel J. GarryiD· 2 shared Aidan R. O’BrieniD· 1 shared Amy Gonzales· 1 shared Andrew S. I. LoudoniD· 1 shared Andrew W. TraffordiD· 1 shared Ane Miren SalvadoriD· 1 shared Anne N. HarringtoniD· 1 shared Antony D. AdamsoniD· 1 shared

Activity by Year

2019-2019 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenetics

Daniel J. GarryORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

GeneticsGenome biologyPeer-reviewedAug 25, 2019

Re-Evaluating One-step Generation of Mice Carrying Conditional Alleles by CRISPR-Cas9-Mediated Genome Editing Technology

Channabasavaiah B. Gurumurthy, Aidan R. O’Brien, Rolen M. Quadros…·Atsushi Yoshiki

The paper re-evaluates the efficiency of a CRISPR-Cas9 method for generating conditional knockout alleles in mice, finding very low success rates and high rates of undesired alleles.

102 citationstop 3%

mousestatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintFeb 7, 2019

A novel algorithm for the collective integration of single cell RNA-seq during embryogenesis

Wuming Gong, Bhairab N. Singh, Pruthvi Shah…·Daniel J. Garry

This paper introduces a novel algorithm to integrate heterogeneous temporal scRNA-seq datasets and reconstruct lineage trajectories, identifying Ebf1 as a key transcription factor for mouse endothelial development.

3 citations

mousescRNA-seq

𝕏 PostBluesky