Author

Cristal Zúñiga

San Diego State UniversityORCID 0000-0002-0135-7429Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Systems Biology· 2 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:metabolomics· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Karsten ZengleriD· 2 shared Alejandro ZepedaiD· 1 shared Alex A. BlacuttiD· 1 shared Alexander A. AksenoviD· 1 shared Alexandre OliveiraiD· 1 shared Alexey V. MelnikiD· 1 shared Ali LotfiiD· 1 shared Alina RenziD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersSystems Biology

Karsten ZenglerORCID

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3 papers

Recent·Most cited

Predicting strain-specific metabolic capabilities in the Genus Pseudomonas using a Flux-to-AI approach unravels hidden cell envelope properties.

Carlos Focil-Espinosa, Christopher Dalldorf, Diego Martínez, Alejandro Zepeda, Cristal Zúñiga

Computational and Structural Biotechnology Journal · Mar 1, 2026Peer-reviewedSystems Biology

FROG Analysis Ensures the Reproducibility of Genome Scale Metabolic Models

Karthik Raman, Miroslav Kratochvíl, Brett G. Olivier, Matthias König, Pratyay Sengupta, Dinesh Kumar Kuppa Baskaran, Tung V. N. Nguyen, Daniel Lobo, St. Elmo Wilken, Krishna Kumar Tiwari, Aswathy K. Raghu, Indumathi Palanikumar, Lavanya Raajaraam, Maziya Ibrahim, Sanjaay Balakrishnan, , Rahuman S. Malik‐Sheriff

The paper introduces FROG analysis to standardize reproducibility assessments of genome-scale metabolic models, resulting in full reproducibility of all tested models.

bioRxiv · Sep 24, 2024 · PreprintSystems Biology

Spatial chemistry of citrus reveals molecules bactericidal to Candidatus Liberibacter asiaticus

Alexander A. Aksenov, Alex A. Blacutt, Nichole A. Ginnan, Philippe E. Rolshausen, Alexey V. Melnik, Ali Lotfi, Emily C. Gentry, Manikandan Ramasamy, Cristal Zúñiga, Karsten Zengler, Kranthi Kiran Mandadi, Greg McCollum, Pieter C. Dorrestein, M. Caroline Roper

This study uses spatial metabolomics to identify bactericidal compounds in citrus plants infected with Candidatus Liberibacter asiaticus, suggesting potential alternatives to antibiotics for HLB treatment.

Scientific Reports · Sep 1, 2024Peer-reviewedPlant Biology