Author

Jian Xu

Chinese Academy of SciencesORCID 0000-0002-0548-8477Unclaimed ORCID profile · follow to get notified of new preprints

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Jian Xu7 papers · Yale University

Biology Disciplines

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Microbiology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 2 Research Focus:clustering· 2 Assay:metagenomics· 2 Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Xixian WangiD· 2 shared Anle GeiD· 1 shared Bo Gao· 1 shared Bo ZhuiD· 1 shared Chong Li· 1 shared Cui Hua LiuiD· 1 shared David S. PerliniD· 1 shared Feiyi LiuiD· 1 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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2 shared papersMicrobiology

Xixian WangORCID

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Author profile →

3 papers

Recent·Most cited

The common evolution of fungicide persistence in cryptococcosis patients

Yuyan Xie, Weixin Ke, Xin Fan, Heping Xu, Wenzhao Wang, Zhen Zeng, Na Zhang, Haoran Ma, Zhongjie Tang, Huawei Zhu, Lei Jiang, Bo Zhu, Guohui Shi, Sihan Yang, Minling Yu, , Linqi Wang

The paper identifies common evolutionary events leading to fungicide persistence in Cryptococcus neoformans clinical isolates and shows ACO2 deficiency as a key predictor of high persistence.

bioRxiv · Aug 26, 2026 · PreprintMicrobiology

Rapid and Quantitative Phage Susceptibility Test by Ramanome

Xiao Han, Xiaofu Wan, Yang Zhou, Xiaoting Fu, X B Zheng, Bo Gao, Shi Huang, Anle Ge, Jiadong Huang, Hongzhou Lu, Jian Xu

This paper introduces RPST, a ramanome-based platform for rapid and quantitative phage susceptibility testing, achieving 96% concordance with plaque assays and enabling dynamic assessment of infection dynamics.

mLife · May 21, 2026Peer-reviewedMicrobiology

RamEx: An R package for high-throughput microbial ramanome analyses with accurate quality assessment

Yanmei Zhang, Gongchao Jing, Rongze Chen, Yanhai Gong, Yuandong Li, Yongshun Wang, Xixian Wang, Jia Zhang, Yuli Mao, Yi He, Xiaoshan Zheng, Mingchao Wang, Hao Yuan, Jian Xu, Luyang Sun

RamEx is an R package for high-throughput microbial ramanome analysis with quality assessment and classification, achieving high accuracy in anomaly detection and phenotyping.

Microbiome · Feb 10, 2026Peer-reviewedBioinformatics