Melanie Christine Föll

In Situ, Antibody-Independent, and Multiplexed Characterization of Amyloid Plaques by MALDI MS/MS Imaging Using iprm-PASEF

This study demonstrates the use of iprm-PASEF for in situ, antibody-independent, and multiplexed characterization of amyloid plaques in tissue samples.

Spatial Proteomics By Parallel Accumulation-Serial Fragmentation Supported MALDI MS/MS Imaging: A First Glance Into Multiplexed and Spatial Peptide Identification

This paper introduces a novel MALDI imaging method combining TIMS-PASEF for multiplexed and spatial peptide identification in tissue samples.

Cardinal v3 - a versatile open source software for mass spectrometry imaging analysis

Cardinal v3 provides a versatile open-source tool for reproducible mass spectrometry imaging analysis, supporting advanced data processing and statistical methods for large-scale experiments.

Galaxy Training: A Powerful Framework for Teaching!

The paper introduces Galaxy Training Network (GTN) as a framework for creating and sharing FAIR training materials for data analysis, with recent improvements to support educators and expand its use in various learning environments.

Democratizing Data-Independent Acquisition Proteomics Analysis on Public Cloud Infrastructures Via The Galaxy Framework

The paper provides a Galaxy-based pipeline for DIA proteomics analysis, enabling reproducible and accessible processing through a web interface.

A proteomics sample metadata representation for multiomics integration, and big data analysis.

The paper introduces a standardized metadata format for proteomics datasets to improve reusability and integration across public repositories.

Accessible and reproducible mass spectrometry imaging data analysis in Galaxy

The paper integrates mass spectrometry imaging tools into Galaxy to enable accessible, reproducible, and transparent analysis of MSI data.