Author

Clare E Thakker

University College LondonORCID 0000-0002-1907-3176Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:human· 2 Approach:statistical model· 2 Assay:CITE-seq· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Assay:flow cytometry· 1

Frequent Co-Authors

Benjamin M. ChainiD· 2 shared Joshua RosenheimiD· 2 shared Mahdad NoursadeghiiD· 2 shared Adlina Chan· 1 shared Alex ManniD· 1 shared Alison Boyers· 1 shared Andreas Tiffeau-MayeriD· 1 shared Andrew G. T. PyoiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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Focal author (center)Selected co-authorORCID co-authorUnlinked name

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2 shared papersBiophysics

Benjamin M. ChainORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Temporal Dynamics of Antigen-Specific T Cell Expansion in Primary SARS-CoV-2 Infection

Andrew G. T. Pyo, Adlina Chan, Joshua Rosenheim, Clare E Thakker, Lucy C. K. Bell, Gayathri Nageswaran, Suzanne Byrne, Ben Killingley, David Scobie, Mariya Kalinova, Alison Boyers, Andrew P. Catchpole, Alex Mann, Rik G.H. Lindeboom, Marko Nikolić, , Benny Chain

The paper quantifies T cell response dynamics during primary SARS-CoV-2 infection, showing clone-intrinsic properties drive clonal kinetics and providing insights for vaccine design.

bioRxiv · Nov 4, 2025 · PreprintBiophysics

Single-cell transcriptome and T cell receptor profiling of the tuberculin skin test

Carolin T. Turner, Joshua Rosenheim, Clare E Thakker, Aneesh Chandran, Holly Wilson, Cristina Venturini, Gabriele Pollara, Benjamin M. Chain, Gillian S. Tomlinson, Mahdad Noursadeghi

The paper profiles single-cell transcriptomes and T cell receptors in human tuberculin skin tests to characterize the immune response to Mycobacterium tuberculosis.

bioRxiv · Jun 25, 2024 · PreprintImmunology