Author

Alan Cabrera

Boston UniversityORCID 0000-0002-2546-0260Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Assay:ChIP-seq· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:differential expression· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1

Frequent Co-Authors

Isaac B. HiltoniD· 2 shared Douglas H. PhanstieliD· 1 shared Eliza ThulsoniD· 1 shared Eric S. DavisiD· 1 shared Hyejung WoniD· 1 shared Ivana Yoseli QuirogaiD· 1 shared Jacob GoelliD· 1 shared Jeffrey P. SpenceiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersBioinformatics

Isaac B. HiltonORCID

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2 papers

Recent·Most cited

BioinformaticseLifePeer-reviewedJan 12, 2026

Predicting the effect of CRISPR-Cas9-based epigenome editing

Sanjit Singh Batra, Alan Cabrera, Jeffrey P. Spence…·Yun S Song

The paper trains machine learning models to predict gene expression from histone PTMs using ENCODE data and validates predictions with CRISPR-Cas9-based epigenome editing experiments.

5 citations

humanChIP-seq

𝕏 PostBluesky

GenomicsCell ReportsPeer-reviewedNov 1, 2022

Temporal analysis suggests a reciprocal relationship between 3D chromatin structure and transcription

Kathleen S Metz Reed, Eric S. Davis, Marielle L. Bond…·Douglas H. Phanstiel

The paper analyzes temporal changes in chromatin structure and gene expression during macrophage activation, finding a reciprocal relationship between loops and transcription.

57 citationstop 3%

humanChIP-seq

𝕏 PostBluesky