Author

Yutaro Uchida

Institute of Science TokyoORCID 0000-0002-2790-6879Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Molecular Biology· 2 Bioinformatics· 1 Genetics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 4 Approach:statistical model· 4 Assay:bulk RNA-seq· 3 Research Focus:cell type annotation· 2 Organism:human· 2 Organism:mouse· 2 Assay:scRNA-seq· 2 Assay:ATAC-seq· 1

Frequent Co-Authors

Hiroshi AsaharaiD· 4 shared Anne-Marie MalfaitiD· 2 shared Hannah SwahniD· 2 shared Martin LotziD· 2 shared Merissa OlmeriD· 2 shared Ryota KurimotoiD· 2 shared Takahide MatsushimaiD· 2 shared Tomoki ChibaiD· 2 shared

Activity by Year

2020-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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4 shared papersMolecular Biology

Hiroshi AsaharaORCID

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4 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 3, 2026

Integrated transcriptomic and epigenomic profiling of human cartilage reveals coordinated changes in fibronectin expression, splicing, and receptor signaling during osteoarthritis progression

Martin Lotz, Hannah Swahn, Takuya Sakamoto…·William D Bugbee

This study profiles human cartilage across OA grades, revealing changes in fibronectin expression, splicing, and receptor signaling during disease progression.

DOI 10.64898/2026.10.29.762608

humanbulk RNA-seq

Molecular BiologybioRxivPreprintOct 30, 2026

Single-nucleus multiome profiling reveals osteocyte-centered remodeling of human subchondral bone across osteoarthritis severity

Yutaro Uchida, Hannah Swahn, Yu Okuno…·Martin Lotz

The paper uses single-nucleus multiome sequencing to analyze subchondral bone in OA, finding increased osteocyte SMAD2/3 activity and chondrocyte-derived FN1 signaling with disease severity.

DOI 10.64898/2026.10.29.762653

humanscRNA-seq

Molecular BiologybioRxivPreprintSep 18, 2026

NAT10 supports CAG repeat-associated mRNA stabilization and is associated with hepatic metabolic reprogramming during spaceflight

Ryota Kurimoto, Tomoaki Tanaka, Izumi Ohno…·Hiroshi Asahara

This study identifies NAT10 as a regulator of CAG repeat-containing mRNA stability and links its upregulation in spaceflight to metabolic reprogramming in mouse liver.

DOI 10.64898/2026.09.17.752365

mousebulk RNA-seq

GeneticsPLoS ONEPeer-reviewedDec 15, 2020

Transcriptome analysis of sevoflurane exposure effects at the different brain regions

Hiroto Yamamoto, Yutaro Uchida, Tomoki Chiba…·Hiroshi Asahara

This study identifies KLF4 as a potential transcriptional regulator of angiogenesis and neural development in sevoflurane-exposed mice brains.

11 citations

mousebulk RNA-seq