Author

Patrick Pence

Washington University in St. LouisORCID 0000-0002-2970-9342Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Organism:human· 1 Approach:statistical model· 1

Frequent Co-Authors

Anamika BasuiD· 1 shared Antoni RibasiD· 1 shared Christopher A. MilleriD· 1 shared Cody A. RamireziD· 1 shared Cristina Puig-SausiD· 1 shared Ethan D. McClainiD· 1 shared Gavin P. DunniD· 1 shared Huiming XiaiD· 1 shared

Activity by Year

2023-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Anamika BasuORCID

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1 paper

Recent·Most cited

Computational prediction of MHC anchor locations guide neoantigen identification and prioritization

Huiming Xia, Joshua F. McMichael, Michelle Becker‐Hapak, Onyinyechi C. Onyeador, Rico Buchli, Ethan D. McClain, Patrick Pence, Suangson Supabphol, Megan M. Richters, Anamika Basu, Cody A. Ramirez, Cristina Puig-Saus, Kelsy C. Cotto, Sharon L. Freshour, Jasreet Hundal, , Malachi Griffith

The paper predicts MHC anchor positions for 328 HLA alleles and shows that incorporating these improves neoantigen identification by correcting misclassified candidates in tumor samples.

Science Immunology · Apr 7, 2023Peer-reviewedBioinformatics