Author

Nathan B. Pincus

Northwestern UniversityORCID 0000-0002-3134-7176Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1

Frequent Co-Authors

Alan R. HauseriD· 2 shared Antonio OliveriD· 2 shared Cheng‐Hsun ChiuiD· 2 shared Egon Anderson OzeriD· 2 shared Jonathan P. AlleniD· 2 shared Aliki ValdesiD· 1 shared Ami Siddharth BhattiD· 1 shared Andrew R. RezvaniiD· 1 shared

Activity by Year

2020-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersMicrobiology

Alan R. HauserORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Comparison of Galleria mellonella, Epithelial Cell Cytotoxicity, and Mouse Model of Bacteremia to Measure Pseudomonas aeruginosa Virulence

Aliki Valdes, Christopher M. R. Axline, Travis J. Kochan, Sophia Nozick, Timothy J. Ward, Issay Niki, Ethan M. VanGosen, David Hynes, Julia Nelson, Preeti Garai, Tania Afzal, Daniel Boris Amusin, Sumitra D. Mitra, Timothy Lee Turner, William Cheng, , Alan R. Hauser

This study compares Galleria mellonella, epithelial cell cytotoxicity, and mouse models for measuring Pseudomonas aeruginosa virulence, finding G. mellonella correlates better with mouse results for population-level trends.

Infection and Immunity · Aug 19, 2026Peer-reviewedMicrobiology

Differential effects of two common GVHD prophylaxis regimens on the gut microbiome: Results from the BMT CTN 1801 study

Jakob Wirbel, Wael Saber, Michael J. Martens, Jonathan U. Peled, Tessa M. Andermann, Teng Fei, Erin F. Brooks, Boryana Doyle, Nathan B. Pincus, Robert R. Jenq, Merav Bar, Javier Bolaños‐Meade, Brandi Bratrude, Saurabh Chhabra, Sung Won Choi, , Ami Siddharth Bhatt

This study compares the effects of two GVHD prophylaxis regimens on the gut microbiome in allo-HCT recipients and finds that while PTCy reduces microbiome diversity and bile acid metabolism, it is linked to better clinical outcomes.

bioRxiv · Feb 20, 2026 · PreprintMicrobiology

A Genome-based Model to Predict the Virulence of Pseudomonas aeruginosa Isolates

Nathan B. Pincus, Egon Anderson Ozer, Jonathan P. Allen, Marcus Nguyen, James J. Davis, Deborah R. Winter, Chih-Hsien Chuang, Cheng‐Hsun Chiu, Laura Zamorano, Antonio Oliver, Alan R. Hauser

This paper uses machine learning to predict the virulence of Pseudomonas aeruginosa isolates based on genomic data, achieving 75% accuracy using random forest models.

mBio · Aug 24, 2020Peer-reviewedGenomics