Author

Erin F. Brooks

Stanford MedicineORCID 0000-0002-5834-0679Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Ami Siddharth BhattiD· 3 shared Boryana DoyleiD· 2 shared Sierra BowdeniD· 2 shared Aaron A. BehriD· 1 shared Andrew R. RezvaniiD· 1 shared Anthony Derek SungiD· 1 shared Aravind NatarajaniD· 1 shared Armin RashidiiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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3 shared papersMicrobiology

Ami Siddharth BhattORCID

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3 papers

Recent·Most cited

Replicative selfish genetic elements are driving rapid pathogenic adaptation of Enterococcus faecium

Matthew P. Grieshop, Aaron A. Behr, Sierra Bowden, Jordan D. Lin, Marco Molari, Gabriella Z. M. Reynolds, Erin F. Brooks, Boryana Doyle, Ashley A. Moore, Guillermo Rodriguez Nava, Jorge Luis Salinas, Niaz Banaei, Ami Siddharth Bhatt

This study identifies ISL3 elements as drivers of rapid genomic evolution in E. faecium, enabling metabolic adaptation in clinical settings through structural variation and gene regulation.

Nature · Apr 22, 2026Peer-reviewedMicrobiology

Differential effects of two common GVHD prophylaxis regimens on the gut microbiome: Results from the BMT CTN 1801 study

Jakob Wirbel, Wael Saber, Michael J. Martens, Jonathan U. Peled, Tessa M. Andermann, Teng Fei, Erin F. Brooks, Boryana Doyle, Nathan B. Pincus, Robert R. Jenq, Merav Bar, Javier Bolaños‐Meade, Brandi Bratrude, Saurabh Chhabra, Sung Won Choi, , Ami Siddharth Bhatt

This study compares the effects of two GVHD prophylaxis regimens on the gut microbiome in allo-HCT recipients and finds that while PTCy reduces microbiome diversity and bile acid metabolism, it is linked to better clinical outcomes.

bioRxiv · Feb 20, 2026 · PreprintMicrobiology

A conserved sRNA regulates mucin adhesion and gut colonization across the Enterococcaceae

Sierra Bowden, Kevin C. Jennings, Soumaya Zlitni, Erin F. Brooks, Megan E. Davin, Aravind Natarajan, Leonard Asare, Brayon J. Fremin, Paul Wilmes, Robert L. Hettich, Nita H. Salzman, Ami Siddharth Bhatt

This study identifies sRNA 84 as a conserved regulator in Enterococcaceae that enhances mucin adhesion and gut colonization by upregulating cell surface proteins.

bioRxiv · Nov 10, 2025 · PreprintMicrobiology