Author

Ulf Reimer

JPT Peptide Technologies (Germany)ORCID 0000-0002-3375-6889Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Immunology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:proteomics· 3 Approach:experimental assay· 2 Organism:human· 2 Research Focus:protein structure prediction· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Holger Wenschuh· 2 shared Karsten SchnatbaumiD· 2 shared Achim LeutziD· 1 shared Andreas F. R. HühmeriD· 1 shared Andreas NitscheiD· 1 shared Andreas ThieliD· 1 shared Armin SoleymaniniyaiD· 1 shared Beate Kruse· 1 shared

Activity by Year

2021-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersBioinformatics

Holger Wenschuh

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Author profile →

3 papers

Recent·Most cited

Learning the Unseen: Data-Augmented Deep Learning for PTM Discovery with Prosit-PTM

Wassim Gabriel, Daniel Paul Zolg, Victor Giurcoiu, Omar Osama Shouman, Polina Prokofeva, Florian Seefried, Florian P Bayer, Ludwig Lautenbacher, Armin Soleymaniniya, Karsten Schnatbaum, Johannes Zerweck, Tobias Knaute, Bernard Delanghe, Andreas F. R. Hühmer, Holger Wenschuh, , Mathias Wilhelm

This paper introduces Prosit-PTM, a deep learning model for PTM discovery that improves zero-shot prediction using a synthetic dataset and chemically-informed encoding.

bioRxiv · Nov 7, 2025 · PreprintBioinformatics

Aging and viral evolution impair immunity against dominant pan-coronavirus-reactive T cell epitope

Lucie Loyal, Karsten Jürchott, Ulf Reimer, Lil Meyer‐Arndt, Larissa Henze, Norbert Mages, Jak Kostrzanowski, Bernhard Reus, Maike Mangold, Beate Kruse, Manuela Dingeldey, Birgit Sawitzki, Janine Michel, Marica Grossegesse, Karsten Schnatbaum, , Andreas Thiel

The paper investigates how aging and viral mutations affect pan-coronavirus immunity, finding reduced T cell responses in older individuals and mutation-driven impact on humoral immunity.

European Journal of Immunology · Jul 1, 2025Peer-reviewedImmunology

A comprehensive motifs-based interactome of the C/EBPα transcription factor

Evelyn Ramberger, Valeria Sapozhnikova, Elisabeth Kowenz‐Leutz, Karin Zimmermann, Nathalie Nicot, Petr V. Nazarov, Daniel Pérez-Hernández, Ulf Reimer, Philipp Mertins, Gunnar A. G. Dittmar, Achim Leutz

This paper maps the C/EBPα interactome using PRISMA and BioID, revealing PTM-dependent interactions and motifs that define its functional plasticity.

iScience · Jun 1, 2021Peer-reviewedMolecular Biology