Author

James Haberberger

Stanford UniversityORCID 0000-0002-3411-0318Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:cell-cell communication· 2 Research Focus:clustering· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Assay:scRNA-seq· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2

Frequent Co-Authors

Alina IsakovaiD· 2 shared Micaiah AtkinsiD· 2 shared Tony Wyss‐CorayiD· 2 shared Aja PraganaiD· 1 shared Amelia FarinasiD· 1 shared Andrew C. YangiD· 1 shared Andy Po‐Yi TsaiiD· 1 shared Anna DongiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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2 shared papersNeuroscience

Alina IsakovaORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Multi-modal choroid plexus pathology in aging and Alzheimer's disease

Huixin Xu, Peter Lotfy, Benjamin Englert, Jane Oberhauser, Lillian I.J. Byer, Jasmin Wihlman, Kia Colangelo, Serhat Vahip Okar, Ashley A. Thommana, Henri A. J. Puttonen, Mikko I. Mäyränpää, Jarno Tuimala, Rute M. S. M. Pedrosa, Darshan Kumar, James Haberberger, , Maria K. Lehtinen

This study creates a multi-modal atlas of choroid plexus pathology across aging and Alzheimer's disease, identifying fibrosis, calcification, and macrophage abnormalities as key features.

bioRxiv · Jan 1, 2026 · PreprintNeuroscience

Spatial and molecular insights into microglial roles in cerebellar aging

Andy Po‐Yi Tsai, Douglas E. Henze, Eduardo Ramirez Lopez, James Haberberger, Chuanpeng Dong, Nannan Lu, Micaiah Atkins, Emma K. Costa, Amelia Farinas, Hamilton Se‐Hwee Oh, Patricia Morán Losada, Yann Le Guen, Alina Isakova, Stephen R. Quake, Tony Wyss‐Coray

The paper investigates age-related changes in cerebellar microglia using single-nuclei RNA sequencing and MERFISH, finding enhanced neuroprotective immune activation and proximity to granule cells in aged mice.

Cell Reports · Nov 26, 2025Peer-reviewedNeuroscience