Author

Jin Woo Oh

Johns Hopkins UniversityORCID 0000-0002-3545-5481Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 3 Research Focus:benchmarking· 2 Assay:CRISPR screen· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Assay:ChIP-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1

Frequent Co-Authors

M BeeriD· 3 shared Alejandro BarreraiD· 1 shared Anshul Bharat KundajeiD· 1 shared Ava Mackay-SmithiD· 1 shared Benjamin R. DoughtyiD· 1 shared Bess P. RoseniD· 1 shared Charles A. GersbachiD· 1 shared Christina S. LeslieiD· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersGenomics

M BeerORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Gapped-kmer sequence modeling robustly identifies regulatory vocabularies and distal enhancers conserved between evolutionarily distant mammals

Jin Woo Oh, M Beer

The paper identifies conserved regulatory elements between humans and mice using a novel gapped-kmer alignment method, discovering 23,660 novel enhancers.

Nature Communications · Jul 31, 2024Peer-reviewedGenomics

Dynamic network-guided CRISPRi screen reveals CTCF loop-constrained nonlinear enhancer-gene regulatory activity in cell state transitions

Renhe Luo, Jielin Yan, Jin Woo Oh, Xi Wang, Dustin Shigaki, Wilfred Wong, Hyunwoo Cho, Dylan Murphy, Ronald R. Cutler, Bess P. Rosen, Julián Pulecio, Dapeng Yang, Rachel A. Glenn, Tingxu Chen, Qing V. Li, , M Beer

The paper uses a CRISPRi screen in hESC differentiation to identify enhancers with nonlinear regulatory activity, revealing a CTCF loop-constrained model for improved enhancer prediction.

Nature Genetics · Jul 24, 2023Peer-reviewedGenetics

Multi-center integrated analysis of non-coding CRISPR screens

David Yao, Josh Tycko, Jin Woo Oh, Lexi R. Bounds, Sager J. Gosai, Lazaros Lataniotis, Ava Mackay-Smith, Benjamin R. Doughty, Idan Gabdank, Henri Schmidt, Ingrid Youngworth, Kalina Andreeva, Xingjie Ren, Alejandro Barrera, Yunhai Luo, , Steven K. Reilly

The paper reports 109 non-coding CRISPR screens analyzing 13.3Mb of the genome, identifies CRE-gene links, and provides guidelines and tools for screening non-coding regulatory elements.

bioRxiv · Dec 21, 2022 · PreprintGenomics