Alli L. Gombolay

Genome-wide ribonucleotide detection in Archaea

The paper investigates the role of RNase H types 1 and 2 in removing ribonucleotides from the genomes of two archaeal species using combined experimental and sequencing approaches.

Distinct features of ribonucleotides within genomic DNA in Aicardi-Goutieres syndrome (AGS)-ortholog mutants of Saccharomyces cerevisiae

This study examines rNMP incorporation in AGS-ortholog yeast mutants, revealing differences in rNMP abundance and strand-specific patterns.

Mapping ribonucleotides embedded in genomic DNA to single-nucleotide resolution using Ribose-Map

Ribose-Map provides a standardized toolkit for analyzing ribonucleotide sequencing data at single-nucleotide resolution, enabling identification of ribonucleotide incorporation patterns.

Disproportionate presence of adenosine in mitochondrial and chloroplast DNA of Chlamydomonas reinhardtii

The paper identifies a disproportionate incorporation of adenosine in mitochondrial and chloroplast DNA of Chlamydomonas reinhardtii compared to nuclear DNA, linked to elevated ATP levels.