Author

Michał Kadlof

University of WarsawORCID 0000-0002-4293-4456Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:Hi-C· 2 Organism:human· 2 Research Focus:software / tool· 2 Research Focus:benchmarking· 1 Research Focus:dimensionality reduction· 1 Assay:electronic health records· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Dariusz PlewczyńskiiD· 3 shared Adriana MagalskaiD· 1 shared Agnieszka Walczak· 1 shared Andrzej Antoni SzczepankiewicziD· 1 shared Anurupa Devi YadavalliiD· 1 shared Ariana Brenner ClerkiniD· 1 shared Artur WolnyiD· 1 shared Ben BusbyiD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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3 shared papersGenomics

Dariusz PlewczyńskiORCID

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3 papers

Recent·Most cited

The challenge of chromatin model comparison and validation a project from the first international 4D Nucleome Hackathon

Jędrzej Kubica, Sevastianos Korsak, Ariana Brenner Clerkin, David Kouřil, Dvir Schirman, Anurupa Devi Yadavalli, Krzysztof H. Banecki, Michał Kadlof, Ben Busby, Dariusz Plewczyński

The paper describes a project from the 4D Nucleome Hackathon aimed at developing a workflow for comparing and validating chromatin models, identifying challenges in model comparison and software development.

PLoS Computational Biology · Aug 19, 2025Peer-reviewedGenomics

Ultrastructural Visualization of 3D Chromatin Folding Using Serial Block-Face Scanning Electron Microscopy and In Situ Hybridization (3D-EMISH)

Paweł Trzaskoma, Błażej Ruszczycki, Byoungkoo Lee, Katarzyna Karolina Pels, Katarzyna Krawczyk, Grzegorz Bokota, Andrzej Antoni Szczepankiewicz, Jesse Aaron, Agnieszka Walczak, Małgorzata Alicja Śliwińska, Adriana Magalska, Michał Kadlof, Artur Wolny, Zofia Parteka-Tojek, Sebastian Arabasz, , Grzegorz Marek Wilczynski

This paper develops a new electron microscopy method to visualize 3D chromatin folding at ultra-resolution in human cells and finds high heterogeneity in chromatin structures.

Nature Communications · May 1, 2020Peer-reviewedGenomics

Spring Model - chromatin modeling tool based on OpenMM

Michał Kadlof, Julia Różycka, Dariusz Plewczyński

The paper introduces a tool for modeling chromatin structures using molecular mechanics and OpenMM, allowing users to generate 3D structures from contact data.

Methods · Nov 29, 2019Peer-reviewedGenomics