Author

Naomi Iris van den Berg

University of CambridgeORCID 0000-0002-4516-8558Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:metagenomics· 3 Organism:human· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:differential expression· 1 Research Focus:ecology & biodiversity· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Kiran Raosaheb PatiliD· 3 shared Arianna BasileiD· 2 shared Lajos KalmáriD· 2 shared Rui GuaniD· 2 shared Sonja BlascheiD· 2 shared A. R. Gontao BrochadoiD· 1 shared Abhijit MajiiD· 1 shared Achuthan AmbatiD· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 32 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersMicrobiology

Kiran Raosaheb PatilORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Interspecies interactions drive bacterial proteome reorganisation and emergent metabolism

Stephan Kamrad, Simone Mozzachiodi, Sonja Blasche, Simran Kaur Aulakh, David Scheidweiler, Arianna Basile, Rui Guan, Rob Bradley, Naomi Iris van den Berg, Michael Mülleder, Markus Ralser, Kiran Raosaheb Patil

This study examines how bacterial proteomes and metabolomes change in response to interspecies interactions in gut microbiota co-cultures, revealing extensive molecular reorganization and emergent metabolic pathways.

bioRxiv · May 14, 2025 · PreprintMicrobiology

Emergent metabolic interactions in resistance to Clostridioides difficile invasion

Achuthan Ambat, Naomi Iris van den Berg, Francisco Zorrilla, Shruti Menon, Abhijit Maji, Arianna Basile, Sudeep Ghimire, Lajos Kalmár, Kiran Raosaheb Patil, Joy Scaria

The paper identifies key microbial interactions and metabolic pathways that confer resistance to C. difficile invasion using synthetic and clinical communities.

bioRxiv · Aug 29, 2024 · PreprintSystems Biology

Emergent survival and extinction of species within gut bacterial communities

Naomi Iris van den Berg, Melanie Tramontano, Rui Guan, Sergej Andrejev, Sonja Blasche, Yongkyu Kim, Martina Klünemann, A. R. Gontao Brochado, Lajos Kalmár, Anja Telzerow, Peer Bork, Daniel C. Sévin, Athanasios Typas, Kiran Raosaheb Patil

The paper shows how species in gut bacterial communities can survive or go extinct based on resource availability and metabolic interactions, identifying emergent survival and community-driven extinctions.

bioRxiv · Apr 29, 2024 · PreprintMicrobiology