Author

Qiongjing Zou

The University of Texas Southwestern Medical CenterORCID 0000-0002-4636-0795Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:benchmarking· 2 Assay:imaging· 2 Research Focus:software / tool· 2 Research Focus:cell-cell communication· 1

Frequent Co-Authors

Gaudenz M. DanuseriD· 3 shared Andrew D. WeemsiD· 2 shared Bo-Jui ChangiD· 2 shared Edward M. JenkinsiD· 2 shared Felix ZhouiD· 2 shared Gabriel Muhire GihanaiD· 2 shared Meghan DriscolliD· 2 shared Andrew J. Ewald· 1 shared

Activity by Year

2023-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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3 shared papersBioinformatics

Gaudenz M. DanuserORCID

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3 papers

Recent·Most cited

Universal consensus 3D segmentation of cells from 2D segmented stacks

Felix Zhou, Zach Marin, Clarence Yapp, Qiongjing Zou, Benjamin A. Nanes, Stephan Daetwyler, Andrew R. Jamieson, Md Torikul Islam, Edward M. Jenkins, Gabriel Muhire Gihana, Jinlong Lin, Hazel M. Borges, Bo-Jui Chang, Andrew D. Weems, Sean J. Morrison, , Gaudenz M. Danuser

The paper introduces u-Segment3D, a tool that converts 2D cell segmentations into 3D consensus segmentations without training data, demonstrating effectiveness across diverse datasets.

Nature Methods · Nov 1, 2025Peer-reviewedBioinformatics

Cellular Harmonics for the Morphology-invariant Analysis of Molecular Organization at the Cell Surface

Hanieh Mazloom-Farsibaf, Qiongjing Zou, Rebecca Hsieh, Gaudenz M. Danuser, Meghan Driscoll

The paper introduces u-signal3D, a framework for analyzing molecular organization on cell surfaces in a morphology-invariant way, validated with synthetic and real data.

Nature Computational Science · Sep 14, 2023Peer-reviewedBioinformatics

Surface-guided computing to quantify dynamic interactions between cell morphology and molecular signals in 3D

Felix Zhou, Virangika K. Wimalasena, Qiongjing Zou, Andrew D. Weems, Gabriel Muhire Gihana, Edward Jenkins, Bingying Chen, Bo-Jui Chang, Meghan Driscoll, Andrew J. Ewald, Gaudenz M. Danuser

The paper introduces u-Unwrap3D to map 3D cell surfaces and analyze interactions between geometry and molecular signals, revealing new dynamics in immune and tumor cell behaviors.

bioRxiv · Apr 12, 2023 · PreprintBioinformatics