Microscope control with a natural language agent
Zach Marin, Amr Abouelezz, Néstor M. Castillo…·Jonas Ries
The paper introduces MicroClaw, an AI agent that automates complex microscopy workflows across platforms without requiring expert knowledge.
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University of ViennaORCID 0000-0001-5341-9911Unclaimed ORCID profile · follow to get notified of new preprints
10 papers
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Zach Marin, Amr Abouelezz, Néstor M. Castillo…·Jonas Ries
The paper introduces MicroClaw, an AI agent that automates complex microscopy workflows across platforms without requiring expert knowledge.
Hao Sha, Lucas-Raphael Müller, Nestor Miguel Castillo Duque de Estrada…·Jonas Ries
This paper introduces DECODE-Plex, a deep learning framework for multi-channel single-molecule localization microscopy, improving imaging speed and quality in dense, overlapping data.
Felix Zhou, Zach Marin, Clarence Yapp…·Gaudenz M. Danuser
The paper introduces u-Segment3D, a tool that converts 2D cell segmentations into 3D consensus segmentations without training data, demonstrating effectiveness across diverse datasets.
Nadja Hümpfer, Zach Marin, Amin Zehtabian…·Helge Ewers
This study develops a multimodal imaging framework to analyze nanoscale reorganization of cytokinetic proteins during cell division, revealing a new substep and creating detailed molecular maps.
Jinlong Lin, Zach Marin, Xiaoding Wang…·Kevin M. Dean
The paper introduces MCT-ASLM, a microscopy platform that enables subcellular resolution imaging of whole tissues, demonstrating its application in studying neuronal circuits, kidney innervation, and tumor microenvironments.
Zach Marin, Xiaoding Wang, Dax W. Collison…·Kevin M. Dean
navigate provides an open-source platform for smart light-sheet microscopy, enabling automated and user-friendly LSFM workflows without requiring specialized expertise.
Jinlong Lin, Dushyant Mehra, Zach Marin…·Kevin M. Dean
The paper introduces a new image acquisition method for light-sheet microscopes that improves spatial context placement and reduces post-processing needs, achieving higher field of view and resolution.
Yujin Bao, Zach Marin, Xiongchao Chen…·Joerg Bewersdorf
The paper develops a combined microscope platform that integrates quantitative phase contrast and super-resolution fluorescence imaging for high-sensitivity visualization of sub-cellular structures and molecules in their cellular context.