Mark Harfouche

High-throughput multi-camera array microscope platform for automated 3D behavioral analysis of swimming zebrafish larvae

This paper introduces a high-throughput 24-camera array microscope for automated 3D behavioral analysis of zebrafish larvae, enabling accurate tracking and morphological dynamics at high frame rates.

High-Throughput Tracking of Freely Moving Drosophila Reveals Variations in Aggression and Courtship Behaviors

This paper develops a high-throughput imaging and analysis pipeline to quantify aggression and courtship behaviors in freely moving Drosophila, revealing genotype-specific behavioral variations.

High throughput machine learning pipeline to characterize larval zebrafish motor behavior

The paper develops a machine learning pipeline to classify larval zebrafish behaviors using semi-supervised learning, showing high accuracy in detecting spontaneous and stimulus-evoked behaviors.

Parallelized Brightfield and Fluorescence Imaging of Organoids Using a Scalable Multi-Camera Platform

The paper introduces a multi-camera array scanner (MCAS) that significantly reduces imaging time for organoids, enabling faster and more consistent analysis of growth and responses to treatments.

High-speed 4D fluorescence light field tomography of whole freely moving organisms

This paper introduces ReFLeCT, a high-speed volumetric fluorescence imaging technique that captures 4D videos of freely moving zebrafish and Drosophila larvae with high-resolution 3D reconstruction.

Automated, high-throughput quantification of EGFP-expressing neutrophils in zebrafish by machine learning and a highly-parallelized microscope

This paper develops a high-throughput method to count EGFP-expressing neutrophils in zebrafish larvae using a parallelized microscope and machine learning, validated against manual counts.

Fast and sensitive diffuse correlation spectroscopy with highly parallelized single photon detection

This paper introduces a high-sensitivity DCS system with 1024 parallel detection channels, enabling fast and sensitive measurement of blood flow and physiological variations.