Author

Jia Li

Vanderbilt University Medical CenterORCID 0000-0002-4969-7158Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Jia Li11 papers · Chinese Academy of Sciences

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Assay:scRNA-seq· 3 Research Focus:cell type annotation· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Approach:optimal transport· 1

Frequent Co-Authors

Yu ShyriD· 2 shared Alain P. GobertiD· 1 shared Alan J. SimmonsiD· 1 shared Anna N. Conner· 1 shared Baldeep PablaiD· 1 shared Bennett A. LandmaniD· 1 shared Can CuiiD· 1 shared Candice L.Y. Mak· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersBioinformatics

Yu ShyrORCID

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Author profile →

3 papers

Recent·Most cited

A Specialized Epithelial Cell Type Regulating Mucosal Immunity and Driving Human Crohn's Disease

Jia Li, Alan J. Simmons, Caroline V. Hawkins, Sophie Chiron, Marisol A Ramirez-Solano, Naila Tasneem, Harsimran Kaur, Yanwen Xu, Frank L. Revetta, Paige N. Vega, Shunxing Bao, Can Cui, Regina N. Tyree, Larry W. Raber, Anna N. Conner, , Qi Liu

The paper identifies a novel epithelial cell type, LND, in Crohn's disease that is associated with immune dysregulation and disease activity.

Nature Communications · Aug 22, 2024Peer-reviewedBioinformatics

Single-cell and Spatial Transcriptomics Clustering with an Optimized Adaptive K-Nearest Neighbor Graph

Jia Li, Yu Shyr, Qi Liu

aKNNO improves clustering of both abundant and rare cell types in single-cell and spatial transcriptomics data by using an optimized adaptive k-nearest neighbor graph.

bioRxiv · Oct 13, 2023 · PreprintBioinformatics

Scope+: An open source generalizable architecture for single-cell atlases at sample and cell levels

Danqing Yin, Yue Cao, Junyi Chen, Candice L.Y. Mak, Ken H.O. Yu, Yingxin Lin, Jiaxuan Zhang, Jia Li, Joshua W. K. Ho, Jean Yee Hwa Yang

Scope+ provides an open-source architecture for accessing and analyzing large single-cell atlases at the cell level, demonstrated through the Covidscope portal for COVID-19 data.

bioRxiv · Dec 3, 2022 · PreprintBioinformatics