Author

John Erik Pandolfino

Northwestern UniversityORCID 0000-0002-4993-9559Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Immunology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Organism:human· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1

Frequent Co-Authors

Deborah R. WinteriD· 3 shared Adam L. Karami· 2 shared Dustin A. CarlsoniD· 2 shared Kelly A. WhelaniD· 2 shared Margarette H. ClevengeriD· 2 shared Marie‐Pier TétreaultiD· 2 shared Nirmala Prabu GonsalvesiD· 2 shared Alex Shaeffer· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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3 shared papersImmunology

Deborah R. WinterORCID

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Author profile →

3 papers

Recent·Most cited

Esophageal epithelial Ikkβ deletion promotes eosinophilic esophagitis in experimental allergy mouse model

Margarette H. Clevenger, Cenfu Wei, Adam L. Karami, Lia Elyse Tsikretsis, Dustin A. Carlson, John Erik Pandolfino, Nirmala Prabu Gonsalves, Deborah R. Winter, Kelly A. Whelan, Marie‐Pier Tétreault

This study shows that deleting Ikkβ in esophageal epithelial cells worsens eosinophilic esophagitis in a mouse model, highlighting the importance of IKKβ/NFκB signaling in preventing allergic inflammation.

Journal of Allergy and Clinical Immunology · Jul 10, 2024Peer-reviewedImmunology

Suprabasal cells retaining stem cell identity programs drive basal cell hyperplasia in eosinophilic esophagitis

Margarette H. Clevenger, Adam L. Karami, Dustin A. Carlson, Peter J. Kahrilas, Nirmala Prabu Gonsalves, John Erik Pandolfino, Deborah R. Winter, Kelly A. Whelan, Marie‐Pier Tétreault

bioRxiv · Apr 20, 2023 · PreprintMolecular Biology

Three Distinct Transcriptional Profiles of Monocytes Correlate with Disease Activity in SSc Patients

Hadijat M. Makinde, Julia L.M. Dunn, Gaurav T. Gadhvi, Mary A. Carns, Kathleen Aren, Anh H Chung, Lutfiyya N. Muhammad, Jing Song, Carla Marie Cuda, Salina T. Dominguez, John Erik Pandolfino, Jane E. Dematte D’Amico, G. R. Scott Budinger, Shervin Assassi, Tracy Frech, , Deborah R. Winter

This study identifies three monocyte transcriptional subgroups in SSc patients that correlate with disease activity, particularly lung function.

bioRxiv · Jan 29, 2022 · PreprintGenomics