Author

Jordan D. Lin

Stanford MedicineORCID 0009-0004-7250-474XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:human· 3 Research Focus:gene regulatory network inference· 2 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Ami Siddharth BhattiD· 3 shared Boryana DoyleiD· 2 shared Matthew P. GrieshopiD· 2 shared Aaron A. BehriD· 1 shared Angela Shang-Mei HickeyiD· 1 shared Ann LiniD· 1 shared Ashley A. MooreiD· 1 shared Danica T. SchmidtkeiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersMicrobiology

Ami Siddharth BhattORCID

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3 papers

Recent·Most cited

A microproteome screen identifies immunomodulatory bacterial microproteins encoded in expanded gene arrays in Leptotrichia

Mark Ragheb, Yuya Kiguchi, Jordan D. Lin, Florian T. Hoffmann, Leighton H. Daigh, Meenakshi Chakraborty, Boryana Doyle, Matthew P. Grieshop, Ann Lin, Dylan G. Maghini, Kaitlyn K. Spees, Lacramioara Bintu, Michael Cory Bassik, Ami Siddharth Bhatt

The paper identifies immunomodulatory bacterial microproteins from Leptotrichia using a microproteome screen and shows they influence macrophage polarization.

bioRxiv · Aug 12, 2026 · PreprintMicrobiology

Replicative selfish genetic elements are driving rapid pathogenic adaptation of Enterococcus faecium

Matthew P. Grieshop, Aaron A. Behr, Sierra Bowden, Jordan D. Lin, Marco Molari, Gabriella Z. M. Reynolds, Erin F. Brooks, Boryana Doyle, Ashley A. Moore, Guillermo Rodriguez Nava, Jorge Luis Salinas, Niaz Banaei, Ami Siddharth Bhatt

This study identifies ISL3 elements as drivers of rapid genomic evolution in E. faecium, enabling metabolic adaptation in clinical settings through structural variation and gene regulation.

Nature · Apr 22, 2026Peer-reviewedMicrobiology

Analysis and culturing of the prototypic crAssphage reveals a phage-plasmid lifestyle

Danica T. Schmidtke, Angela Shang-Mei Hickey, Jakob Wirbel, Jordan D. Lin, Ivan Liachko, Gavin Sherlock, Ami Siddharth Bhatt

This study characterizes the crAssphage lifestyle as a phage-plasmid, demonstrating its persistence in the gut microbiome without causing host lysis or chromosomal integration.

Cell Host & Microbe · Jul 28, 2025Peer-reviewedMicrobiology