Author

John James Zaunders

St Vincent's Hospital SydneyORCID 0000-0002-5912-5989Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Molecular Biology· 2 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Assay:imaging· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:experimental assay· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Angelique Levert‐MignoniD· 2 shared Bruce James BrewiD· 2 shared Emma Yoo· 2 shared Hirotaka OdeiD· 2 shared Kazuo SuzukiiD· 2 shared Lucette A. CysiqueiD· 2 shared Yasumasa IwataniiD· 2 shared Ahmed A TawakoliD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersMolecular Biology

Angelique Levert‐MignonORCID

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3 papers

Recent·Most cited

Molecular BiologybioRxivPreprintJun 8, 2026

Transcriptionally Active HIV Reservoirs Enriched for Interferon-Inducible APOBEC3-Related Mutational Signatures Associate with Arterial Inflammation

Kazuo Suzuki, Angelique Levert‐Mignon, Emma Yoo…·Bruce James Brew

This study finds that APOBEC3-associated premature stop codon signatures in HIV reservoirs are linked to aortic inflammation in ART-suppressed individuals, suggesting a role in cardiovascular risk.

DOI 10.64898/2026.06.03.729898

humanlong-read sequencing

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Molecular BiologybioRxivPreprintJun 6, 2026

Transcriptionally Active HIV Reservoirs Enriched for Interferon-Inducible APOBEC3-Related Mutational Signatures Associate with Reduced Neuroaxonal Integrity

Kazuo Suzuki, Angelique Levert‐Mignon, Emma Yoo…·Bruce James Brew

The paper investigates how transcriptionally active HIV-1 reservoirs with APOBEC3-associated mutational signatures affect neuroaxonal integrity in individuals on suppressive antiretroviral therapy.

DOI 10.64898/2026.06.02.729658

humanbulk RNA-seq

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Developmental BiologyiSciencePeer-reviewedAug 18, 2025

OpenEMMU: a versatile, open-source EdU multiplexing methodology for studying DNA replication and cell cycle dynamics

Osvaldo Contreras, Chris G. Thekkedam, John James Zaunders…·Richard Paul Harvey

OpenEMMU improves EdU staining efficiency, brightness, and multiplexing for DNA replication and cell cycle analysis using affordable, open-source reagents.

8 citations

zebrafishimaging

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