Qiye Li

The paper identifies a Hymenoptera-specific gene, torch, that controls caste-specific organ size by co-opting conserved Hippo signaling machinery across species.

OrionGeno annotates over 5,300 eukaryotic genomes using a phylogeny-aware deep learning model, outperforming existing methods in gene and protein structure prediction.

The paper uses population genomic analyses to study the social parasite Acromyrmex insinuator and its hosts, finding reduced genetic diversity, eroded adaptive potential, and cryptic population structure in the parasite.

The paper presents 320 nearly-complete East Asian genome assemblies, revealing new genetic diversity and structural variations not present in existing global pangenomes.

The paper constructs a near-complete genome assembly for the bearded dragon Pogona vitticeps and characterizes the Z sex chromosome, identifying key genes involved in sex determination.

This paper introduces an improved nanopore sequencing platform called CycloneSEQ, demonstrating long-duration sequencing and high yield with applications in genomics.

The paper presents a draft genome assembly of the eastern banjo frog, identifying repetitive elements and protein-coding genes, and highlights its utility for studying anuran phylogeny and genome evolution.

IRIS decodes image signals from in situ sequencing into nucleotide sequences and records quality scores and spatial information.