Yuliang Dong

FEDRANN improves long-read overlap detection using dimensionality reduction and approximate nearest neighbors, outperforming existing methods on real data.

NanoporeDB is a structural database of multimeric protein nanopores, providing 3D models and quantitative metrics to support nanopore-based sensing and synthetic biology.

The paper evaluates CycloneSEQ long-read sequencing for improving bacterial genome assemblies, showing it can produce complete circular genomes when combined with short-read data.

This study introduces Stereo-XCR-seq, a method for in situ single-cell T and B cell repertoire sequencing, revealing spatial heterogeneity in lymphoid aggregates in immune disorders.

The paper presents a telomere-to-telomere genome assembly for Oryza longistaminata, revealing structural variations and gene duplications that may contribute to its advantageous traits.

This paper introduces an improved nanopore sequencing platform called CycloneSEQ, demonstrating long-duration sequencing and high yield with applications in genomics.

The paper introduces a new sequencing chemistry (CoolMPS) that improves signal intensity and eliminates scar interference in massively parallel sequencing.

This paper introduces stLFR, a low-cost method for long DNA sequencing that enables accurate variant calling, haplotyping, and de novo assembly.