Author

Stephanie Gu

Boston Children's HospitalORCID 0000-0002-6337-3731Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Assay:fluorescence / live-cell microscopy· 1 Assay:imaging· 1

Frequent Co-Authors

Ainan GengiD· 1 shared Carl WuiD· 1 shared Emily Winther SørenseniD· 1 shared Fahad RashidiD· 1 shared Hashim M. Al‐HashimiiD· 1 shared Iain F. DavidsoniD· 1 shared James M. BergeriD· 1 shared Jan‐Michael PetersiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBiochemistry

Ainan GengORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

BiophysicsNucleic Acids ResearchPeer-reviewedJun 10, 2026

A Modular Framework for Automated Segmentation and Analysis of AFM Imaging of Chromatin Organization

Emily Winther Sørensen, Sushil Pangeni, Raquel Merino‐Urteaga…·Taekjip Ha

DNAsight automates AFM image analysis of chromatin organization, revealing protein-specific structural signatures and nucleosome spacing distributions.

DOI 10.1093/nar/gkag632

imagingfluorescence / live-cell microscopy

𝕏 PostBluesky

BiochemistryAngewandte Chemie International EditionPeer-reviewedApr 11, 2025

An A-T Hoogsteen base pair in a naked DNA hairpin motif: A Protein-Recognized Conformation

Serafima Guseva, Or Szekely, Ainan Geng…·Hashim M. Al‐Hashimi

The paper shows that an A-T Hoogsteen base pair forms in naked DNA hairpins without protein binding, and identifies a DNA-specific motif stabilized by this pairing.

1 citation

DNA methylationexperimental assay

𝕏 PostBluesky