James R. Monaghan

The paper maps the anatomical distribution of dopamine D1 and muscarinic M4 receptor-expressing cells across brain regions in mice.

This paper introduces a computational framework to model limb skeletal patterning in mice and axolotls by integrating growth, gene regulation, and signaling spread, showing varying contributions of these factors across limb regions.

The paper develops a hybrid agent-based model to simulate limb blastema formation, identifying epithelial softening and Wnt signaling as key factors in regeneration.

The paper investigates the role of TRPV4 and PIEZO2 in axolotl limb regeneration, finding that TRPV4 inhibition reduces limb length without affecting cartilage differentiation.

This study uses WISH-BONE to analyze 3D Sost mRNA and sclerostin distribution in mouse tibia midshafts after mechanical loading, showing region-specific changes and highlighting the method's importance for mechanoadaptation research.

WISH-BONE labels osteocyte mRNA and protein in 3D adult mouse bones, enabling spatially preserved biomarker expression analysis.

This study shows that retinoic acid breakdown via CYP26B1 determines positional identity during amphibian limb regeneration, with Shox playing a key role in PD skeletal element formation.

This study shows adult axolotls can regenerate retinas with diverse cell types and identifies Notch signaling's role in modulating regeneration.

The paper investigates how mechanical stimuli influence joint morphogenesis by combining experimental and computational approaches in axolotl limb regeneration.

The paper generates a transgenic axolotl line expressing FUCCI to study cell cycle dynamics during tissue regeneration.

This paper develops a method to visualize and quantify macromolecule synthesis in vivo using click chemistry and light sheet microscopy, demonstrating its sensitivity to biological perturbations.

The paper identifies shared and species-specific enteric neuron subtypes in humans and mice using transcriptional profiling and in situ visualization.

This study investigates Neuregulin-1's role in axolotl lung regeneration via ErbB receptors, showing its necessity for proliferation and regeneration.