Gabriel Costa Monteiro Moreira

This study maps cis and trans meQTLs in cattle blood DNA methylation using EpiChip data, identifying regulatory genes and hotspots associated with methylation patterns.

The paper presents a reusable TWAS workflow for cattle to identify gene-trait associations using GWAS and transcriptomic data, improving variant calling and detecting novel associations.

This study identifies heat stress-induced DNA hypomethylation in dairy cows' blood methylome, affecting immune-related regulatory regions and genes.

The paper introduces the RUMIGEN EpiChip, a DNA methylation array for cattle, demonstrating its utility in studying phenotypic variation and age prediction through methylation analysis.

This paper discusses the adoption of Nextflow and nf-core frameworks to standardize bioinformatics pipelines, improving collaboration and interoperability across research communities.

This study identifies DNA methylation changes in sows related to parity and environmental enrichment, suggesting epigenetic adaptation and potential biomarkers for affective states.

This study identifies reliable circular RNAs in bovine tissues by comparing total-RNAseq and mRNAseq data, revealing many artificial circRNAs and false entries in existing catalogs.

This study performs a GWAS on Belgian Blue beef cattle to identify coding variants associated with body size and muscular development, finding new genes and variants linked to growth in mammals.

The paper annotates transcription start sites and enhancers in cattle using CAGE sequencing across multiple tissues and populations to improve genome annotation and inform breeding programs.

This paper benchmarks phasing software using a whole-genome sequenced cattle pedigree, finding ShapeIT4.1 and Beagle5.2 to be the most accurate for long haplotype segments.

The paper identifies a 12 kb multi-allelic CNV associated with mastitis resistance in dairy cattle by linking it to increased GC expression and a cis-regulatory enhancer.

The paper identifies three SNPs associated with carcass traits in chickens by analyzing predicted deleterious variants within QTL regions.