Stanislav Dusko Ehrlich

Competitive advantage of hypervirulent Group B Streptococcus for neonatal colonization revealed by metagenomic analysis of gut microbiota

The paper identifies GBS CC17's competitive advantage over non-CC17 GBS in neonatal gut colonization through metagenomic analysis and in vitro experiments.

Gut microbiome stratification reveals functional metabolic signatures linked to host health

The paper uses the enterosignature model to stratify gut microbiome variation and links functional metabolic patterns to host health outcomes across multiple cohorts.

Exploring the relationship between GBA1 host genotype and gut microbiome in the GBA1L444P/WT mouse model: Implications for Parkinson disease pathogenesis

This study investigates whether GBA1 heterozygosity affects gut microbiome composition in a mouse model, finding no significant differences between genotypes.

Enhanced Computational and Experimental Approaches for Comparative Analysis of the Human Mycobiome

The paper develops and evaluates optimized computational and experimental methods for analyzing the human mycobiome, identifying novel fungal species in oral and gut samples.

The Reactobiome Unravels a New Paradigm in Human Gut Microbiome Metabolism

The paper introduces the reactobiome, a stratification method for the human gut microbiome, identifying five reactotypes with distinct metabolic features and validating them in a longitudinal cohort.

Compositional and functional differences of the mucosal microbiota along the intestine of healthy individuals

This study compares mucosal microbiota composition and function along the intestine using shotgun metagenomics, highlighting functional enrichments and antimicrobial resistance patterns.

Microbiome Determinants and Physiological Effects of the Benzoate-Hippurate Microbial-Host Co-Metabolic Pathway

This study identifies microbiome determinants of hippurate, a metabolite linked to metabolic health, and demonstrates its protective effects in mice through benzoate-hippurate pathway analysis.

MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data

MSPminer reconstitutes microbial pan-genomes from shotgun metagenomic data by binning co-abundant genes, improving sensitivity over existing tools.