Qi Wang

This study shows retinoid signaling specifies frontonasal identity and represses maxillary identity in cranial neural crest cells during facial development in mice.

This study identifies unconventional IFNω-like genes as dominant in bat type I IFN loci and constitutive antiviral responses, revealing pan-bat immune system characteristics.

The paper introduces JACUSA2, a software framework for analyzing RNA modification data from multiple sequencing platforms and experimental conditions, demonstrating its use on m6A detection datasets.

The paper introduces a computational tool to identify epigenetic markers in cancer by analyzing enhancer networks across epigenomic datasets.

ScNapBar enables accurate cell barcode assignment for Nanopore single cell RNA sequencing by combining UMI and Naive Bayes approaches, distinguishing cell populations with active or silenced nonsense-mediated decay.

This paper introduces IHRW, a hypergraph random walk model for predicting three-drug therapy, showing improved performance in cancer case studies.

The paper identifies brain-region specific splicing patterns at single-cell and spatial resolution in postnatal mice, revealing cell-type specific and region-specific isoform expression.

The paper introduces a computational framework, SeqATU, to predict alternative transcription units in bacterial genomes using RNA-Seq data, achieving high precision and recall in E. coli.

The paper introduces scCAT-seq, a method to simultaneously assay chromatin accessibility and transcriptome in single cells, and demonstrates its application in human pre-implantation embryos to reveal regulatory heterogeneity.