Author

Yueyuan Xu

Duke UniversityORCID 0000-0002-8571-0700Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Approach:statistical model· 3 Research Focus:differential expression· 2 Assay:DNA methylation· 2 Organism:human· 2 Organism:mouse· 2 Assay:scRNA-seq· 2 Assay:ChIP-seq· 1

Frequent Co-Authors

Yarui DiaoiD· 3 shared Christopher D. KontosiD· 2 shared James C. OttoiD· 2 shared Kaileen FeiiD· 2 shared Kevin W. SoutherlandiD· 2 shared Lindsey A. OlivereiD· 2 shared Qunsheng Dai· 2 shared Yu XiangiD· 2 shared

Activity by Year

2023-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 43 mutual co-author links

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3 shared papersGenomics

Yarui DiaoORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Vcam1+ Fibro-adipogenic Progenitors Mark Fatty Infiltration in Chronic Limb Threatening Ischemia

Qunsheng Dai, Changxin Wan, Yueyuan Xu, Kaileen Fei, Lindsey A. Olivere, Hana S. Shafique, Shaghayegh Sadeghmousavi, Camryn L. Johnson, Brianna Garrett, Leo Akers, Derek Peters, James C. Otto, Christopher D. Kontos, Zhiceng Ji, Yarui Diao, Kevin W. Southerland

The paper identifies Vcam1+ fibro-adipogenic progenitors as markers of fatty infiltration in chronic limb threatening ischemia using single-cell transcriptomics in mouse models.

JVS Vascular Science · Jan 1, 2025Peer-reviewedGenomics

Annotation and assessment of functional variants in regulatory regions using epigenomic data in farm animals

Ruixian Ma, Renzhuo Kuang, Jingcheng Zhang, Jiahao Sun, Yueyuan Xu, Xinbo Zhou, Zheyu Han, Mingyang Hu, Daoyuan Wang, Yuhua Fu, Yong Zhang, Xinyun Li, Mengjin Zhu, Shuhong Zhao, Tao Xiang, , Yunxia Zhao

The paper annotates and categorizes functional variants in farm animals using epigenomic data, showing improved genomic prediction accuracy and identifying trait-related tissues and cell types.

bioRxiv · Feb 6, 2024 · PreprintGenomics

Pro-inflammatory macrophages impair skeletal muscle regeneration in ischemic-damaged limbs by inducing precocious differentiation of satellite cells

Kevin W. Southerland, Yueyuan Xu, Derek Peters, Xiaolin Wei, Xin Lin, Yu Xiang, Kaileen Fei, Lindsey A. Olivere, Jeremy M. Morowitz, James C. Otto, Qunsheng Dai, Christopher D. Kontos, Yarui Diao

This study identifies pro-inflammatory macrophages as a key factor impairing skeletal muscle regeneration in ischemic-damaged limbs by inducing premature differentiation of satellite cells.

Genome Medicine · Nov 10, 2023Peer-reviewedGenomics

Crosstalk between RNA m6A and DNA methylation regulates transposable element chromatin activation and cell fate in human pluripotent stem cells

Tongyu Sun, Yueyuan Xu, Yu Xiang, Jianhong Ou, Erik J. Soderblom, Yarui Diao

Nature Genetics · Jul 20, 2023Peer-reviewedGenetics