Author

Joshua F. E. Koenig

McMaster UniversityORCID 0000-0002-8909-5039Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Research Focus:cell signaling & trafficking· 2 Research Focus:cell type annotation· 2 Research Focus:development & morphogenesis· 2 Research Focus:host-pathogen & immune response· 2 Organism:mouse· 2 Assay:bulk RNA-seq· 1 Research Focus:cancer & tumor microenvironment· 1

Frequent Co-Authors

Alberto CamineroiD· 1 shared Alex GregorieffiD· 1 shared Alex Say· 1 shared Ally Xinyi Kong· 1 shared Andrei Bogza· 1 shared Anmar Ayoub· 1 shared Anna Buetow· 1 shared Araceli Díaz‐PeralesiD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 10 mutual co-author links

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1 shared paperImmunology

Alberto CamineroORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Microbial metabolism of food allergens determines the severity of IgE-mediated anaphylaxis

Elisa Sánchez‐Martínez, Liam Emile Rondeau, Manuel Garrido‐Romero, Bruna Barbosa da Luz, Dominic A. Haas, Gavin Yuen, Dana Coppens, Peter Hall, Rebecca Dang, Xuan-Yu Wang, Lucía Moreno‐Serna, Celia López‐Sanz, Emilio Nuñez‐Borque, María Garrido‐Arandia, Araceli Díaz‐Perales, , Alberto Caminero

This study shows that gut and oral bacteria metabolize peanut allergens, affecting IgE-binding and anaphylaxis severity in allergic individuals.

Cell Host & Microbe · Mar 3, 2026Peer-reviewedImmunology

A searchable database of publications using fluorescent probes and flow cytometry to study antigen-specific B cells

Sunil Palani, Ally Xinyi Kong, Anna Buetow, Ashraf Siddig Yousif, Alex Say, Zhongchen Wang, Kuntal Biswas, Julia Blaszczyk, Mônica Josiane Rodrigues‐Jesus, Darlene R. Malavé Ramos, Vignesh Senthilkumar, Scott Chappell, Joshua F. E. Koenig, Justin J. Taylor

The paper creates a searchable database of publications using fluorescent probes and flow cytometry to study antigen-specific B cells, showing increased research focus on pathogens like SARS-CoV-2 and HIV.

bioRxiv · Oct 8, 2025 · PreprintImmunology

A type 1 immune-stromal cell network mediates disease tolerance and barrier protection against intestinal infection

Susan Westfall, Maria Elena Gentile, Tayla M. Olsen, Danielle Karo‐Atar, Andrei Bogza, Franziska Röstel, Ryan D. Pardy, Giordano Mandato, Ghislaine Fontès, De’Broski R. Herbert, Heather J. Melichar, Valérie Abadie, Martin J. Richer, Donald Cuong Vinh, Joshua F. E. Koenig, , Irah L. King

This study shows that type 1 immunity, via IFNγ signaling, protects intestinal tissue from damage during helminth infection without reducing parasite burden.

Cell · Apr 22, 2025Peer-reviewedImmunology

A Novel Ex Vivo Approach for Investigating Profibrotic Macrophage Polarization Using Murine Precision-Cut Lung Slices

Megan Vierhout, Anmar Ayoub, Pareesa Ali, Vaishnavi R. Kumaran, Safaa Naiel, Takuma Isshiki, Joshua F. E. Koenig, Martin R.J. Kolb, Kjetil Ask

This paper develops an ex vivo model using murine precision-cut lung slices to study profibrotic macrophage polarization and validates its utility for fibrosis research.

Biochemical and Biophysical Research Communications · Nov 20, 2024Peer-reviewedImmunology