Dana L. Cortade

GROQ-seq Datasets Across Transcription Factors (LacI, RamR, VanR), T7 RNA Polymerase and TEV Protease

The paper introduces GROQ-seq, a high-throughput platform for linking protein function to sequencing data, and presents pilot datasets for transcription factors, polymerases, and proteases.

GROQ-seq Enables Cross-site Reproducibility for High-Throughput Measurement of Protein Function

This study demonstrates that GROQ-seq provides reproducible, scalable measurements of protein function across different facilities.

Unified sampling framework and experimental benchmarking of sequence- and structure-based protein models

The paper benchmarks sequence- and structure-based protein models using a unified framework, showing structure-based models outperform others in generating functional variants.

Results of the Protein Engineering Tournament: An Open Science Benchmark for Protein Modeling and Design

The paper introduces a protein engineering competition to benchmark computational models for protein design and characterization, with results from a pilot tournament involving seven teams.