Author

Corey M Hudson

Sandia National Laboratories CaliforniaORCID 0000-0003-4796-538XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioengineering· 2 Bioinformatics· 1 Synthetic Biology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:drug response / drug discovery· 1 Organism:E. coli· 1

Frequent Co-Authors

Amanda Reider ApeliD· 2 shared Andi DhrosoiD· 2 shared Aviv SpinneriD· 2 shared Catherine BaranowskiiD· 2 shared Dana L. CortadeiD· 2 shared David RossiD· 2 shared Douglas Michael DensmoreiD· 2 shared Erika Alden DeBenedictisiD· 2 shared

Activity by Year

2017-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioengineering

Amanda Reider ApelORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

BioengineeringbioRxivPreprintMay 29, 2026

GROQ-seq Datasets Across Transcription Factors (LacI, RamR, VanR), T7 RNA Polymerase and TEV Protease

Aviv Spinner, Shwetha Sreenivasan, James R. McLellan…·Catherine Baranowski

The paper introduces GROQ-seq, a high-throughput platform for linking protein function to sequencing data, and presents pilot datasets for transcription factors, polymerases, and proteases.

3 citations

E. colibulk RNA-seq

𝕏 PostBluesky

BioengineeringbioRxivPreprintMay 19, 2026

GROQ-seq Enables Cross-site Reproducibility for High-Throughput Measurement of Protein Function

Aviv Spinner, David Ross, Dana L. Cortade…·Corey M Hudson

This study demonstrates that GROQ-seq provides reproducible, scalable measurements of protein function across different facilities.

2 citations

bacteria (other)proteomics

𝕏 PostBluesky

BioinformaticsNucleic Acids ResearchPeer-reviewedFeb 28, 2020

New candidates for regulated gene integrity revealed through precise mapping of integrative genetic elements

Catherine M. Mageeney, Britney Y. Lau, Julian M. Wagner…·Kelly Porter Williams

The paper introduces TIGER, a software tool that precisely maps integrative genetic elements, revealing 19 new cases of gene integrity regulation by IGEs.

36 citations

bacteria (other)statistical model

𝕏 PostBluesky

Synthetic BiologybioRxivPreprintNov 21, 2017

RetSynth: Solving all optimal retrosynthesis solutions using dynamically constrained integer linear programming

Leanne S. Whitmore, Ali Pınar, Anthe George, Corey M Hudson

RetSynth identifies all optimal retrosynthesis pathways for target chemicals using dynamically constrained integer linear programming.

DOI 10.1101/223271

optimal transportstatistical model

𝕏 PostBluesky